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Episcanpy: Epigenomics Single Cell Analysis in Python

License: BSD 3-Clause "New" or "Revised" License

Python 99.68% R 0.32%

episcanpy's Introduction

EpiScanpy – Epigenomics single cell analysis in python

EpiScanpy is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. EpiScanpy is the epigenomic extension of the very popular scRNA-seq analysis tool Scanpy (Genome Biology, 2018) [Wolf18]. For more information on scanpy, read the following documentation.

EpiScanpy paper is now accessible on Nature Communications. For more information on how to use the package, more information are available on the website.

Releases
GitHub release GitHub tag PyPI
Build status via Conda
Conda-Linux
Python versions
py39 py38 py37 py36 py27
Operating System
ubuntu-20.04 macOS Catalina windows-latest
Document status
Docs
Github status
GitHub contributors GitHub stars GitHub forks GitHub watchers GitHub followers

Documentation

The documentation for epiScanpy is available here. If epiScanpy is useful to your research, consider citing epiScanpy.

episcanpy's People

Contributors

mrichter23 avatar kridsadakorn avatar hal9032 avatar rlannes avatar crsct avatar le-ander avatar ataidobrynin avatar mvinyard avatar michalk8 avatar

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