tanaylab / labnorm Goto Github PK

raw_vals <- ln_patients_quantile_value(norm_vals$qval, norm_vals$age, norm_vals$Would you like to use the default directory ~/.local/share/labNorm?
(if you choose 'No', the file will be downloaded to a temporary directory)
1: Yes
2: No

Selection: 1
trying URL 'https://labnorm.s3.eu-west-1.amazonaws.com/Clalit.tar.gz'
Content type 'application/x-gzip' length 37992184 bytes (36.2 MB)
==================================================
downloaded 36.2 MB

→ Extracting data to ~/.local/share/labNorm.
/usr/bin/gtar: ~/.local/share/labNorm: Cannot open: No such file or directory
/usr/bin/gtar: Error is not recoverable: exiting now
Error in `download_reference_distributions()` at labNorm/R/download.R:44:4:
! There was an error downloading the data. Please check your internet
  connection and try again.
Run `rlang::last_error()` to see where the error occurred.

Enter a frame number, or 0 to exit   

1: ln_patients_quantile_value(norm_vals$qval, norm_vals$age, norm_vals$sex, la
2: quantile-to-value.R#171: ln_download_data()
3: download.R#44: download_reference_distributions(dir, "Clalit")
4: download.R#80: cli::cli_abort("There was an error downloading the data. Ple
5: rlang::abort(message, ..., call = call, use_cli_format = TRUE, .frame = .fr
6: signal_abort(cnd, .file)

Selection: 0
Warning message:
In utils::untar(temp_file, exdir = dir) :
  ‘/usr/bin/gtar -xf '/tmp/RtmpTMfOQB/file3b6885438ae6b' -C '~/.local/share/labNorm'’ returned error code 2