tbep-tech / restoretb

source code for evaluating restoration projects in Tampa Bay

README

Materials for the evaluation of restoration projects in Tampa Bay.

Repository DOI:

Manuscript: https://doi.org/10.1007/s12237-019-00619-w

Shiny: http://shiny.tbep.org/restoreTB/ind_eval.Rmd

Data

Files in /data/ all created using R/dat_proc.R, unless otherwise noted

• grdave.RData grid analyses of year/site match combos for average differences of all stations in TB, for evaluation of all differences section in ind_eval.Rmd

• grdavemanu.RData grid analyses of year/site match combos for average differences of all stations in TB, similar to grdave.RData but addition of subsets by bay segment, early/late/full time series, and only 5/10 combos for slice and mtches

• grdsres.RData grid analyses of year/site match combos for different bn models, created in R/source_me.R

• map.RData base map for plots in all_eval.Rmd created in same file

• restdat.RData restoration projects combined

• reststat.RData location of restoration projects combined

• rndsims.RData nested tibble of results for random simulations

• tb_seg.RData sf object of Tampa Bay segments

• wqdat.RData TB water quality data by site, date, var, val

• wqmtch.RData Match between water quality stations and restoration site locations, for manuscript

• wqstat.RData TB water quality stations as lat/lon

Shiny application

View results: link

restoretb's Issues

update Zenodo link with revised manu

test all random sets in rnd_eval

e.g., didn't do same sites, random dates, same projects

check sub_eval results

Lots of missing data in pre-1994, also could only match to two nearest of each restoration project type

shiny.tbeptech.org updated

Marcus,
The TBEP shiny server is now updated, and is once again serving the restorebayes ind_eval.Rmd file correctly. The direct link is http://shiny.tbeptech.org/restoreTB/ind_eval.Rmd (let me know if you wanted a different path). Also, I synced the TBEP shiny server's files for this project to this Git repo today.

If you wanted to update the Git files/description/links to this new server address, all should be working fine now.

manual word doc edits before resubmission

• double space
• title page format
• refs - reformat some manually that start with abbreviation - GMFMC, GCERC 2013 and 2016, NRDA, SWFWMD, TBEP, RDCT, NASEM
• refs - make sure all fields are present for uncommon bib types
• remove table tags on some
• remove figs, save as separate files
• tables one per page unless two can fit