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Timothy's Projects

ideals icon ideals

Experimentation with computer algebra in Java

java-obo icon java-obo

Java library for parsing and handling OBO ontologies.

letterplayer icon letterplayer

An interface to evaluate Letterpress games, and suggest alternative plays.

load_tools icon load_tools

Tools for efficient and error-tolerant loading of data into SciDB

musee icon musee

Dynamic web app 'presentations', driven by user scrolling, inspired by the NYT

noaa-postgis icon noaa-postgis

Enabling searching geo data from NOAA using Postgis and Postgresql

obroker icon obroker

An implementation of a web-broker for new term requests to an ontology.

pybamview icon pybamview

Browser based application for viewing bam alignments

qc-metrics icon qc-metrics

Read and variant metrics, useable for pipeline quality control purposes

rnadam icon rnadam

An RNA fusion transcript pipeline built on top of ADAM. Apache 2 licensed.

snark icon snark

A nested vector library for Scala.

sunfish icon sunfish

Sunfish: a Python Chess Engine in 111 lines of code

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