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View Code? Open in Web Editor NEWA TDWG Task Group developing a vocabulary for expressing whether an organism(s) was encountered dead or alive, and the cause of death, if known.
A TDWG Task Group developing a vocabulary for expressing whether an organism(s) was encountered dead or alive, and the cause of death, if known.
The NBN Atlas has a dataset of road kill records from a UK-wide citizen science project: https://registry.nbnatlas.org/public/show/dr1628
All records in this dataset would use:
vitality property with the vocabulary term dead
causeOfDeath property with the vocabulary term road kill
Our data contains codes that indicate life status at time of capture. AOR, DOR and IOR (alive on road, dead on road and injured on road).
Please write suggestions on the proposed vocabulary for the core vitality term in this google document: https://docs.google.com/document/d/1FUzJlwo2penHjvNgLmy8z2VJ-ja0HA2vyXpZTFxrPwU/edit
And add any questions or comments below
Definition | Comments or notes on the conditions contributing to the death |
Existing property | |
Existing class | |
Existing property identifier | |
Format | Text |
Required | no |
Repeatable | no |
Constraints | no |
Examples | The animal was injured and starved to death |
Notes | Generally intended to be used with a dwc:basisOfRecord of PreservedSpecimen, MaterialSample, or HumanObservation and with the core property vitality |
CenCOOS has a dataset of volunteer based surveys of marine mammal and seabird carcasses that wash-up on beaches. https://mlml.sjsu.edu/beachcombers/
I believe all records in this dataset would use:
vitality
property with the vocabulary term "dead"
I'm not sure any of the other associated terms would be able to be implemented (causeOfDeath
, underlyingCausesOfDeath
, deathDate
). The term vitalityRemarks
if that is a general comments type of field.
cc'ing CenCOOS folks @patcdaniel and @dianalg in case they have anything to add or just want to follow along.
Definition | The date the organism died |
Existing property | |
Existing class | |
Existing property identifier | |
Format | Date |
Required | no |
Repeatable | no |
Constraints | ISO 8601 date format, resolved to day, month or year |
Examples | |
Notes | Date ranges are allowed. Generally intended to be used with a dwc:basisOfRecord of PreservedSpecimen, MaterialSample, or HumanObservation and with the core property vitality. |
"Mobilizing Millions of Marine Mollusks of the Eastern Seaboard" TCN is using vitality information to inform studies of biotic change. From the grant proposal "...Important trait data will also be incorporated. For the first time, molluscan occurrence data will distinguish between live- and dead-collected specimens, with a defined vocabulary for traits added to each record. Due to the long persistence of molluscan shells, the live/dead- collected distinction is crucial for all studies of biotic change using mollusks. Information on collecting dates will be refined where possible to increase resolution for detecting biotic changes. The data will be shared through public data repositories, including iDigBio, GBIF, OBIS, and the InvertEBase Symbiota portal." https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001510
Definition | Any underlying or secondary diseases, conditions or circumstances leading directly to death of the organism |
Existing property | |
Existing class | |
Existing property identifier | |
Format | Text |
Required | no |
Repeatable | no |
Constraints | none |
Examples | starvation, injury, shot |
Notes | Generally intended to be used with a dwc:basisOfRecord of PreservedSpecimen, MaterialSample, or HumanObservation and with the core property vitality and extension property causeOfDeath. |
Please write suggestions on the proposed vocabulary for the extension property causeOfDeath in this google document: https://docs.google.com/document/d/1Qf-RdsHtUaEb2g1ESBpa4g7vYCwxiovSkj6sUAF0CiM/edit
And add any questions or comments below
Definition | The primary or immediate disease or condition resulting in the death of the organism |
Existing property | |
Existing class | |
Existing property identifier | |
Format | Text |
Required | no |
Repeatable | no |
Constraints | controlled vocabulary |
Examples | Road kill, stranding, starvation |
Notes | Generally intended to be used with a dwc:basisOfRecord of PreservedSpecimen, MaterialSample, or HumanObservation and with the core property vitality. |
Please add your feedback on the controlled vocabulary to this issue: #7
Definition | An indication of whether the organism was alive or dead at the time of collection or observation |
Existing property | |
Existing class | |
Existing property identifier | |
Format | Text |
Required | yes |
Repeatable | no |
Constraints | controlled vocabulary |
Examples | alive, dead , unable to determine, not recorded |
Notes | Generally intended to be used with a dwc:basisOfRecord of PreservedSpecimen, MaterialSample, or HumanObservation. |
Please add your feedback on the controlled vocabulary to this issue: #6
Please write suggestions on the proposed vocabulary for the extension property causeOfDeath in this google document: https://docs.google.com/document/d/128fPGnycGi-2SuFUef5lBH_bfHExc6oEeFtnyl9DyFk/edit
And add any questions or comments below
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