Comments (2)
@bbimber , this option has been added 1c8f218
Also copied some text from the README
By default, a folder .celltypist/
will be created in the user's home directory to store model files. A different path/folder can be specified by exporting the environment variable CELLTYPIST_FOLDER
in your configuration file (e.g. in ~/.bash_profile
).
#In the shell configuration file.
export CELLTYPIST_FOLDER='/path/to/model/folder/'
Does this suffice?
(Btw, I also pushed a new version (0.2.0), you can pip install celltypist)
from celltypist.
very helpful, thank you
from celltypist.
Related Issues (20)
- impatiently waiting for V2 (but very excited) HOT 2
- SGDClassifier / InvalidParameterError: The 'loss' parameter of SGDClassifier must be a str HOT 2
- certificate verification failed when trying to load models HOT 2
- Can not import celltypist HOT 1
- sankeyplot fails in V.1.5.3 HOT 4
- Error in downloading models
- Error happened in models HOT 8
- Invalid expression matrix in `.X`, expect log1p normalized expression to 10000 counts per cell; will try the `.raw` attribute HOT 10
- KeyError when insert conf of majority_voting under `porb match` mode HOT 2
- Preparing custom reference files HOT 2
- Error running celltypist HOT 10
- Allow to specify the AnnData var field that has the gene_symbols instead of only relying on var_names HOT 2
- Harmonize and Integrate HOT 1
- Potentially misleading error when counts are not in expected range HOT 3
- Request: allow to specify AnnData layer to use HOT 1
- confidence score definition HOT 2
- Issues running with conda HOT 3
- Using model trained by scRNA-seq datasets to predict Spatial transcriptmoic dataset HOT 2
- Unable to allocate xxx GiB for an array with shape and data type float64 HOT 2
- Running `celltypist.annotate` with `min_prop` can't create "Heterogeneous" category HOT 2
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from celltypist.