Comments (2)
Hi MJ, thank you for your intertest in CellTypist. Most functions from v2 are already in place in the newest v1.5.2; you can try that.
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Due to some considerations, we have isolated the harmonization and integration modules into a separate tool CellHint, and now CellTypist will be retained as a cell-type-classification-focused tool. If you still have any questions, please refer to CellHint repo, open an issue or let us know.
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Related Issues (20)
- Harmonizing datasets with missing annotations HOT 1
- type error when the input is Anndata HOT 8
- 503 error in models.download_models HOT 2
- download_models corrupts models.json when the server is unavailable HOT 3
- Issue with downloading models: 503 Server Error HOT 4
- reannotation returns many "UNASSIGNED" cells HOT 2
- T helper cells HOT 1
- `ImportError` with `sklearn==1.3.0` HOT 3
- SGDClassifier / InvalidParameterError: The 'loss' parameter of SGDClassifier must be a str HOT 2
- certificate verification failed when trying to load models HOT 2
- Can not import celltypist HOT 1
- sankeyplot fails in V.1.5.3 HOT 4
- Error in downloading models
- Error happened in models HOT 8
- Invalid expression matrix in `.X`, expect log1p normalized expression to 10000 counts per cell; will try the `.raw` attribute HOT 10
- KeyError when insert conf of majority_voting under `porb match` mode HOT 2
- Preparing custom reference files HOT 2
- Error running celltypist HOT 10
- Allow to specify the AnnData var field that has the gene_symbols instead of only relying on var_names HOT 2
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