type error when the input is Anndata about celltypist

[ChuanXu1]

@jjxia955, can you show the full traceback error?

[jjxia955]

Here you go!

[ChuanXu1]

@jjxia955, installing a new version of CellTypist will solve this. This is a problem in the old version,

[hanjun98]

Hi, I recently downloaded it from bioconda, but I got this error, so I re-downloaded it from pip and ran it, but the same error comes up.
What should I do?

[ChuanXu1]

@hanjun98, could you confirm your version by celltypist.__version__ and your installed numpy version with pip show numpy from a terminal?

[hanjun98]

yeap! I cofirmed my version, so I knew my celltypist version is 0.1.9
but I want to update celltypist to latest version, requirements pkg, 'annoy' have so many collision with pkgs in my conda env.
Do you know how long I have to wait for this? Or any way to install?

[ChuanXu1]

@hanjun98, sorry for late reply. The new version (1.6.0) has no dependency on annoy any more.

[ChuanXu1]

This should be solved. Please reopen it if you have further questions.