Comments (3)
@saeedfc, the model details have been updated.
https://www.celltypist.org/models
https://github.com/Teichlab/celltypist_wiki/blob/main/json/models.json#L56
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@saeedfc, good point! The 'Cells_Intestinal_Tract' indeed contains pediatric CD cells. Will clarify this in the model details.
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This issue should be solved. Please let me know if you still need more details for the model.
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Related Issues (20)
- " have completed preprocessing and cell clustering. " HOT 2
- codes for harmonizing the cell labels HOT 2
- the question about conf_score HOT 3
- Error happened in models HOT 8
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- KeyError when insert conf of majority_voting under `porb match` mode HOT 2
- Preparing custom reference files HOT 2
- Error running celltypist HOT 10
- Allow to specify the AnnData var field that has the gene_symbols instead of only relying on var_names HOT 2
- Harmonize and Integrate HOT 1
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- Request: allow to specify AnnData layer to use HOT 1
- confidence score definition HOT 2
- Issues running with conda HOT 3
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- Use of metacells? HOT 4
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- Feature Request: Store freqs in annotation when majority_vote set to True HOT 2
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