tfguinan / scpred

scPred package for cell type prediction from scRNA-seq data

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

scPred is a general method to classify cells based on a low-dimensional representation of gene expression (e.g. PCA).

For more details see our paper in Genome Biology:

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

Installation

Before installing scPred, please install harmony as follows:

devtools::install_github("immunogenomics/harmony")

You can install scPred via devtools as follows:

devtools::install_github("powellgenomicslab/scPred")

How to use scPred

Visit the following vignette to start using scPred:

Introduction to scPred