thehonestgene / ancestor Goto Github PK
View Code? Open in Web Editor NEWPython library to run ancestry analysis
License: MIT License
Python library to run ancestry analysis
License: MIT License
Currently to calculate the pcs for an individual genotype one has to provide both the weights file as well as the reference_pcs file.
This can confuse users as they might run the ancestry analysis with incompatible files.
Solution: Store the weights data (relatively small) inside the reference_pcs file and only allow to pass in that file.
To avoid wrong results, one should check if the correct individual genotype file is used with the correct ref_genotype_pcs file, either by:
Instead of passing in the nucleotide map for retrieving the SNP filter, either pass in a simple csv with snpids or just the imputed genotype file.
This de-couples the library from the imputor library where the nucleotide map is generated
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.