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A data science core based on Docker containers

License: GNU Affero General Public License v3.0

Python 44.14% Shell 7.26% HTML 31.04% PHP 0.94% Dockerfile 16.61%
docker data-science

virtual-core's Introduction

A Data Science core based on Docker containers

Warning

virtual-core isn't maintained anymore!

Summary

Here you can find a set of containers to help creating a data science core architecture, for example:

  • LDAP server
  • PostgreSQL server
  • NFS server (Not active)
  • Samba server (for integration with sequencer technology like Illumina)
  • Galaxy server
  • Zabbix server
  • Software server (i.e. a lot of pre-installed software)
  • Interative Compute server (a place for users to login)
  • Exploratory Analysis server (JupyterHub with JupyterLab)
  • SLURM grid configuration

There is a focus on bioinformatics, but the infrastructure can be used for other applications.

Installation

Please check the project documentation.

Acknowledgements

The sequencer Samba file configuration was originally inspired on David Personette's Samba container. It is currently completely different.

The current Galaxy configuration is based on Björn Grüning's Galaxy container.

Author and License

Copyright by Tiago Antao. Licensed under GNU Affero General Public License version 3.

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