Repositories
timodonnell/pyopen
load csv, excel, json, hdf5, and pickle files into an ipython session
timodonnell/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
timodonnell/Theano
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.
timodonnell/LSUV-keras
Simple implementation of the LSUV initialization in keras
timodonnell/phip-stat
Analysis tools for PhIP-seq experiments
timodonnell/gcloud-psql-cron
Send pg_dump backups to gcloud storage buckets
timodonnell/pepnet
Neural networks for amino acid sequences
timodonnell/alaya
Python library to expose status info or debug output to interested users via a web server embedded in the process
timodonnell/sefara
practical dataset management
timodonnell/genomisc
miscellaneous analysis tools for next generation sequencing datasets
timodonnell/pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
timodonnell/eventlearn
feature extraction from irregularly-spaced timeseries
timodonnell/sparkbox
tools that use Spark's MLlib
timodonnell/tahini
experiments with apache scrunch
timodonnell/mhcpred
MHC Binding Prediction
timodonnell/scikit-learn
scikit-learn: machine learning in Python
timodonnell/immuno
Predicting immunogenicity of short peptides