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A gentle tutorial of accelerated parameter and confidence interval estimation for Hidden Markov Models using Template Model Builder

License: Other

HTML 2.05% C++ 6.35% CSS 0.11% TeX 26.15% R 65.35%
hidden-markov-model tmb confidence-intervals maximum-likelihood-estimation tutorial

hmm_with_tmb's Introduction

A gentle tutorial of accelerated parameter and confidence interval estimation for Hidden Markov Models using Template Model Builder

Contributors: Timothee Bacri1, Geir Drage Berentsen2, Jan Bulla1 and Sondre Hølleland3.

  1. University of Bergen, Norway.
  2. Norwegian Business school, Norway.
  3. Institute of Marine Research, Norway.

Correspondance to: [email protected]

This repository contains the code to produce the R-bookdown website found here.

The folders (code/, data/, functions/) related to the analysis code and results of the paper https://doi.org/10.1002/bimj.202100256 are described in Directory structure.

The folders inside (paper2-github-preprint/) follow a similar structure, but concern a (second) paper https://doi.org/10.1080/00949655.2023.2226788.

Author’s github account

Timothee Bacri - timothee-bacri

Sondre Hølleland - holleland

Geir Berentsen - gberentsen

License

This project is licensed under the GPL v2 License - see LICENSE for details.

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