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100days

100 days of algorithms

alphafold

Open source code for AlphaFold.

api-wow-docs

Documentation for the World of Warcraft web APIs.

armatus

atom

:atom: The hackable text editor

autojump

A cd command that learns - easily navigate directories from the command line

awesome-cheatsheets

超级速查表 - 编程语言、框架和开发工具的速查表，单个文件包含一切你需要知道的东西 :zap:

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-public-datasets

A topic-centric list of HQ open datasets. PR ☛☛☛

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

bam-readcount

count DNA sequence reads in BAM files

basictrendline

an R package for adding trendline of basic linear or nonlinear models and show equation to plot.

bedtools2

A powerful toolset for genome arithmetic.

biopython

Official git repository for Biopython (converted from CVS)

bowtie2

A fast and sensitive gapped read aligner

brew

🍺 The missing package manager for macOS

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

cattlegenome

celluloid_0.11

CELLULOID: tumour cellularity and ploidy tool

celluloid_0.11_tutorial

CELLULOID: tumour cellularity and ploidy tool

chia-pet2

a versatile and flexible pipeline for analysing different variants of ChIA-PET data

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

chromap

Fast alignment and preprocessing of chromatin profiles

ciml

A Course in Machine Learning

complexheatmap

make complex heatmaps as well as self define annotation graphics

computational-genome-analysis

Website for Computational Exome and Genome Analysis

copy-number-analysis

Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis