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rrrpkg

Use of an R package to facilitate reproducible research

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

rstarthere

A guide to some of the most useful R Packages that we know about

sampleproject

A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing Projects"

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

scikit-learn

scikit-learn: machine learning in Python

sed.sf.net

The contents of the sed.sf.net website

sedef

Identification of segmental duplications in the genome

show-me-the-code

Python 练习册，每天一个小程序

slidify

Generate reproducible html5 slides from R markdown

specifications

GFF and GVF specification documents

star

RNA-seq aligner

statistical-learning-method_code

手写实现李航《统计学习方法》书中全部算法

swarm

A robust and fast clustering method for amplicon-based studies

tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

tcgabarcode

tcgamutations

R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)

tcr-seq_benchmarking_publication

tensorflow

Computation using data flow graphs for scalable machine learning

tensorflow-1

TensorFlow for R

test

Test repository

test2

the-art-of-command-line

Master the command line, in one page

the-unix-workbench

:house_with_garden: A Book for Anyone to Get Started with Unix

tidyr

Easily tidy data with spread and gather functions.

tldr

:books: Simplified and community-driven man pages

transitions

A lightweight, object-oriented finite state machine implementation in Python

trf

Tandem Repeats Finder: a program to analyze DNA sequences

trimgalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

tushare

TuShare is a utility for crawling historical data of China stocks