tirganteanga Goto Github PK

2018_ecoli_pathogenicity

Highlight genetic determinants of E. coli's pathogenicity

ancientecoli

Scripts used for the analysis a 16th Century CE Ecoli genome

arg_ast

Program that perform phenotype genotype analysis with antibiotic resistance data

aribalord

A script facilitating the downstream processing of ARIBA summaries

bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

bakta

Rapid & standardized annotation of bacterial genomes & plasmids

beatsonlab-microbialgenomics.github.io

Lab Website

bioinformatics-training

Bioinformatics training resources

comp_bio_mini_project

E. coli K-12 alignment and annotation

cshlcg-labs

Cold Spring Harbor Labs Computational Genomics

dassimecoli

The dassimEcoli R package contains data and code to replicate the analysis of the manuscript: "Genomic diversity of carried Extended spectrum beta-lactamase producing E coli isolates in Blantyre, Malawi"

data-science-for-docs

Data Science For Practicing Clinicians

data-science-for-life-science

CRT outreach program to assist life scientists in learning basic data science skills.

datasci-biomedical-scientists

Introduction to Data Science for Biomedical Scientists

ecoli_vf_collection

Collection of 1069 Escherichia coli virulence factors

ecolicollection

Scripts used for handling my E coli assemblies collection

ecoligenes

Basic operations on E. coli genes

evolution_of_novel_colicins

Python simulation of the evolution of colicins and thier respective immunity genes

fasta36

Git repository for FASTA36 sequence comparison software

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

findvir

Jupyter-notebook/biopython/NCBI-Blast+ quick approach to detect specific genes in bacterial genomes

fripan

Interactive, web tool for exploring pan-genome of bacterial strains

git-rstudio-course

Git Using RStudio

hpc-intro

Lesson materials for an Introduction to High Performance Computing in the tradition of Software Carpentry

inf-biox121_fall2014_de_novo_assembly

introduction-to-conda-for-data-scientists

Introduction to Conda for (Data) Scientists

kaptive

life-sciences-workshop

Life Sciences Workshop

logistic-regression-public-health

Logistic regression for public health

mash

Fast genome and metagenome distance estimation using MinHash