arg_ast : R code to visualize phenotype-genotype associations between resistance genes identified by whole genome sequencing and antibiotic susceptibility testing datasets.
git clone https://github.com/soda460/arg_ast
If need install these R libraries
install.packages('tidyverse')
install.packages('ggplot2')
install.packages('ggrepel')
# optional
install.packages('svglite')
Try to fit your phenotype and genotype data to the format of the csv files loaded by the main program : arg_ast.R
The script data_wrangling.R is highly specific to our datasets.
-
Jean-Simon Brouard, Ph.D.
Biologist in bioinformatics, Science and Technology Branch
Agriculture and Agri-Food Canada / Government of Canada
[email protected] -
Dominic Poulin-Laprade, Ph.D.
Research Scientist, Science and Technology Branch
Agriculture and Agri-Food Canada / Government of Canada
[email protected]
Technically, this script is also useful for me because it make use of quosure objects in R functions.