Genome annotation for Argentine stem weevil, described in https://github.com/TomHarrop/asw-gbs-genome-paper.
Thomas W. R. Harrop, Marissa F. Le Lec, Ruy Jauregui, Shannon E. Taylor, Sarah N. Inwood, Tracey van Stijn, Hannah Henry, et al. 2020. “Genetic Diversity in Invasive Populations of Argentine Stem Weevil Associated with Adaptation to Biocontrol.” Insects 11 (7): 441. 10.3390/insects11070441.
All software run in containers, so the only requirements are:
singularity
≥ 3.5.3snakemake
≥ 5.9.1
snakemake --use-singularity
- Raw reads are hosted at the NCBI SRA under accession PRJNA64051
- Annotation databases for
emapper.py
andinterproscan.sh
(eggnog_proteins.dmnd
,PANTHER
) have to be downloaded separately