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License: GNU General Public License v2.0
R package for tag count comparison
License: GNU General Public License v2.0
Currently the return value of plotMA is a vector of M and A values.
If we reverse the order the to A value and M value, the return value can be readily
passed to plot.xy(). This is probably easier.
By defining TCC() method as a constructor,
TCC object can be created with
tcc <- TCC(count = count, group = group)
which is simpler than
tcc <- new("TCC", count = count, group = group)
Because dumping all the data would not be readable, we should provide a concise show() method.
private$potentialDEG stored DEG as 1.
For the convenience to evaluate the process, it is better to distinguish the direction of difference and assign 1, or 2 to each group of potential DEG.
Could you support the Voom/Limma tools?
names() method should be present to conform standard expectation.
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