Topic: biomedical Goto Github

👇 Here are 227 public repositories matching this topic...

aiconslab / miracl
biomedical,Multi-modal Image Registration And Connectivity anaLysis
Organization: aiconslab
Home Page: https://miracl.readthedocs.io
neuroscience brain atlases connectivity network clarity mri neuroimaging biomedical image-registration

allenai / scispacy
biomedical,A full spaCy pipeline and models for scientific/biomedical documents.
Organization: allenai
Home Page: https://allenai.github.io/scispacy/
scientific-documents spacy custom-pipes nlp biomedical bioinformatics

amzn / amazon-weak-ner-needle
biomedical,Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data
Organization: amzn
bert ner biomedical biomedical-named-entity-recognition weakly-supervised-learning weak-supervision distant-supervision

biocypher / biocypher
biomedical,A unifying framework for biomedical research knowledge graphs
Organization: biocypher
Home Page: https://biocypher.org
bioinformatics biomedical knowledge-graph neo4j framework ontology postgresql rdf rdfs sql

bionlp-hzau / bionlp-corpus
biomedical,Repository used to collect biomedical corpus on the Internet!
Organization: bionlp-hzau
bionlp corpus biomedical

bmdsoftware / neji
biomedical,Flexible and powerful platform for biomedical information extraction from text
Organization: bmdsoftware
text-mining named-entity-recognition biomedical information-extraction concept-extraction java

borgwardtlab / s3m
biomedical,A software package for statistically significant shapelet mining
Organization: borgwardtlab
time-series time-series-analysis time-series-analysis-tool significant-pattern-mining shapelets biomedical-data-science biomedical

cambridgeltl / visual-med-alpaca
biomedical,Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
Organization: cambridgeltl
Home Page: https://cambridgeltl.github.io/visual-med-alpaca/
biomedical biomedical-image-processing foundation-model large-language-models multimodal

caufieldjh / awesome-bioie
biomedical,🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
User: caufieldjh
awesome biomedical text-mining information-extraction nlp awesome-list biomedical-data biomedical-language medical-informatics natural-language-processing

chop-dbhi / data-models
biomedical,Collection of various biomedical data models in parseable formats.
Organization: chop-dbhi
Home Page: https://data-models-service.research.chop.edu
biomedical vocabulary csv schema data-models

correr-zhou / repmode
biomedical,[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".
User: correr-zhou
Home Page: https://arxiv.org/pdf/2212.10066.pdf
biomedical computer-vision cvpr2023 deep-learning dense-prediction machine-learning multi-task-learning

dlab-berkeley / r-deep-learning
biomedical,Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization
Organization: dlab-berkeley
Home Page: https://dlab-berkeley.github.io/Deep-Learning-in-R/slides.html
deep-learning keras tensorflow cloudml biomedical nlp

dreji18 / bio-epidemiology-ner
biomedical,Recognize bio-medical entities from a text corpus
User: dreji18
biomedical epidemiology ner nlp transformers

dterg / biomedical_corpora
biomedical,Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association detection). First version has was published as part of the paper: Dieter Galea, Ivan Laponogov, Kirill Veselkov; Exploiting and assessing multi-source data for supervised biomedical named entity recognition, Bioinformatics, bty152, https://doi.org/10.1093/bioinformatics/bty152 . If you would like to add other (or your) corpora, please submit a pull request and I'll happily approve it.
User: dterg
biomedical corpora corpus corpus-linguistics training-data

ericspod / eidolon
biomedical,Biomedical Visualization and Analysis Framework
User: ericspod
Home Page: https://ericspod.github.io/Eidolon/
python biomedical rendering data-analysis data-visualization king-college-london medical-imaging medical-image-computing image-registration irtk

fedbiomed / fedbiomed
biomedical,A collaborative learning framework for empowering biomedical research
Organization: fedbiomed
Home Page: https://fedbiomed.org
ai biomedical clinical federated learning analytics collaborative

ganjinzero / biobart
biomedical,BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]
User: ganjinzero
Home Page: https://arxiv.org/abs/2204.03905
biomedical generative pretrained-language-model

ganjinzero / kebiolm
biomedical,Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
User: ganjinzero
Home Page: https://arxiv.org/abs/2104.10344
language-model pre-training nlp biomedical

gcy / atrial-fibrillation-detection-blood-pressure-monitor-oscillometric-method-
biomedical,Atrial Fibrillation Detection Blood Pressure Monitor (Oscillometric Method)
User: gcy
blood-pressure-monitor blood-pressure atrial-fibrillation pid-control pid-codes stm32f4 stm32 biomedical blood-pressure-measurment atrial-fibrillation-detection

gcy / pulse-oximeter-with-max3010x
biomedical,This project is MAX3010x library for STM32F4
User: gcy
pulse-oximeter oximeter max30102 max30100 stm32f4 stm32f407g-discovery wxwidgets wxwidgets-applications biomedical biomedical-engineering

gcy / wxecganalyzer
biomedical,This project is for Electrocardiogram(ECG) signal algorithms design and validation, include preprocessing, QRS-Complex detection, embedded system validation, ECG segmentation, label your machine learning dataset, and clinical trial...etc.
User: gcy
Home Page: http://gcyrobot.blogspot.com/2019/09/wxecganalyzer-cross-platform-ecg-signal.html
qrs-detection heart-rate-variability ecg tompkins labeling pan-tompkins electrocardiogram signal chen-algorithm stm32f4

grimmlab / microbiomebestpracticereview
biomedical,Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Organization: grimmlab
Home Page: https://www.bit.cs.tum.de/
microbiome microbiome-analysis microbiome-workflow biomedical best-practices pipeline bioinformatics amplicon-sequencing assembly 16s-rrna

hemelb-codes / hemelb
biomedical,A high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries
Organization: hemelb-codes
lattice-boltzmann hemodynamics blood-vessels hpc biomedical

ibt-fmi / samri
biomedical,Small Animal Magnetic Resonance Imaging via Python.
Organization: ibt-fmi
biomedical fmri functional-connectivity dwi bids fsl neuroimaging small-animals rodent registration

kbogas / medknow
biomedical,Medical Relations and Entities Extraction
User: kbogas
nlp biomedical neo4j semrep metamap relation-extraction umls

kvslab / morphman
biomedical,A collection of tools for manipulation of morphological features in patient-specific geometries
Organization: kvslab
Home Page: https://morphman.readthedocs.io/
geometric-algorithms morphology vascular biomedical

kyegomez / med-palm
biomedical,Towards Generalist Biomedical AI
User: kyegomez
Home Page: https://discord.gg/qUtxnK2NMf
biomedical deep-learning gpt4 multimodal multimodal-deep-learning multimodality opensource

lee-gihun / mediar
biomedical,(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
User: lee-gihun
biomedical cell-biology cell-segmentation instance-segmentation monai multi-modality neurips-2022 pytorch pytorch-implementation pytorch-segmentation

mousavisajad / sleepeegnet
biomedical,SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach
User: mousavisajad
sleep-stage-scoring eeg deep-learning sequence-to-sequence cnn rnn tensorflow biomedical biosignals

omoolab / bioxelnodes
biomedical,For scientific volumetric data visualization in Blender.
Organization: omoolab
Home Page: https://omoolab.github.io/BioxelNodes/latest
biomedical blender geometry-nodes sciart scientific-visualization visualization volume voxel

openlifescience-ai / ai-deadlines
biomedical,
Organization: openlifescience-ai
Home Page: https://openlifescience-ai.github.io/ai-deadlines
acl acm conferences healthcare biomedical clinical clinical-research clinical-trials medical-imaging medical-research

patverga / bran
biomedical,Full abstract relation extraction from biological texts with bi-affine relation attention networks
User: patverga
tensorflow relation-extraction biomedical

plantl-gob-es / lm-biomedical-clinical-es
biomedical,Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).
Organization: plantl-gob-es
nlp transformers language-model biomedical clinical spanish corpora

pluslabnlp / geanet-biomed-event-extraction
biomedical,Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs
Organization: pluslabnlp
Home Page: https://vnpeng.net/members/
event-extraction biomedical covid-19 cord-19 natural-language-processing bert multitask-learning deep-learning

prakhargurawa / drug-similarity-and-link-prediction-using-graph-embeddings-on-medical-knowledge-graph
biomedical,Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.
User: prakhargurawa
ampligraph neural-network graphs knowledge-graph graph-neural-networks machine-learning biomedical graph-convolutional-networks kegg link-prediction

qanastek / drbert
biomedical,DrBERT: A Robust Pre-trained Model in French for Biomedical and Clinical domains
User: qanastek
Home Page: https://drbert.univ-avignon.fr/
bert biomedical french learning machine machine-learning medical ml nlp nlp-machine-learning

raamana / pyradigm
biomedical,Research data management in biomedical and machine learning applications
User: raamana
Home Page: http://raamana.github.io/pyradigm/
machine-learning workflow automation python datastructures userfriendly pandas datascience machine-learning-workflows medical-data biomedical data-structures data-integration neuroscience neuroinformatics neuroimaging

sauravmishra1710 / u-net---biomedical-image-segmentation
biomedical, Implementation of the paper titled - U-Net: Convolutional Networks for Biomedical Image Segmentation @ https://arxiv.org/abs/1505.04597
User: sauravmishra1710
cnn biomedical biomedical-image-processing segmentation image-processing image-segmentation unet-image-segmentation unet unet-segmentation unet-pytorch

sciinstitute / scirun
biomedical,SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.
Organization: sciinstitute
Home Page: http://scirun.org
c-plus-plus visualization mesh-generation scientific-computing scientific-visualization scientific-computations dataflow-programming python linear-systems forward-problem

sleyai / biomedical-segmentation-with-pytorch
biomedical,Biomedical Segmentation with PyTorch and different Convolutional Neural Network Architectures.
User: sleyai
pytorch u-net machine-learning python biomedical semantic-segmentation medical convolutional-neural-networks

som-shahlab / trove
biomedical,Weakly supervised medical named entity classification
Organization: som-shahlab
weak-supervision weakly-supervised-learning pseudo-labeling bert learning-with-noisy-labels ner text-classification biomedical umls umls-metathesaurus

svjan5 / medtype
biomedical,MedType: Improving Medical Entity Linking with Semantic Type Prediction
User: svjan5
entity-linking bert-as-service pytorch biomedical medical state-of-the-art deep-learning

thechymera / behaviopy
biomedical,Behavioral data analysis and plotting in Python.
User: thechymera
animal-behavior data-science plotting multimodality foss biomedical

tuttelikz / farabio
biomedical,:robot: PyTorch toolkit for biomedical imaging :heart:
User: tuttelikz
Home Page: https://farabio.readthedocs.io
deep-learning pytorch python biomedical-imaging biomedical models datasets

typedb-osi / typedb-bio
biomedical,TypeDB Bio: Biomedical Knowledge Graph
Organization: typedb-osi
bioinformatics knowledge-graph knowledge-base drug-discovery biomedical knowledge-discovery

uvacsl / hemocell
biomedical,HemoCell is a high-performance suspension code for simulating blood flows developed by the Computational Science Lab at the University of Amsterdam.
Organization: uvacsl
Home Page: https://computationalscience.nl
biomedical blood-flow hemodynamics hpc lattice-boltzmann

vaticle / biograkn
biomedical,BioGrakn Knowledge Graph
Organization: vaticle
Home Page: https://blog.grakn.ai/biograkn-accelerating-biomedical-knowledge-discovery-with-a-grakn-knowledge-graph-84706768d7d4
biograkn bioinformatics biomedical knowledge-graph knowledge-discovery

vgupta123 / sumpubmed
biomedical,SUMPUBMED: Summarization Dataset of PubMed Scientific Article
User: vgupta123
Home Page: https://vgupta123.github.io/docs/sumpubmed_mainpaper.pdf
nlp machine-learning summarization resources dataset abstractive-summarization extractive-summarization rouge scientific pubmed

wangmengsd / pdd-graph
biomedical,PDD Graph : Bridging MIMIC-III and Linked Data Cloud
User: wangmengsd
Home Page: http://kmap.xjtudlc.com/pdd/index.html
biomedical diseases drugs ehr emr icu linked-open-data patient rdf-store

zjunlp / mol-instructions
biomedical,[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
Organization: zjunlp
ai-for-science biomedical dataset instruction-following large-language-models llama molecule natural-language-processing protein science