Topic: biomedical Goto Github

Some thing interesting about biomedical

👇 Here are 213 public repositories matching this topic...

aiconslab / miracl

biomedical,Multi-modal Image Registration And Connectivity anaLysis

Organization: aiconslab

Home Page: https://miracl.readthedocs.io

neuroscience brain atlases connectivity network clarity mri neuroimaging biomedical image-registration

alibaba-research / chineseblue

biomedical,Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)

Organization: alibaba-research

benchmark bert chinese biomedical medical natural-language-processing

allenai / scispacy

biomedical,A full spaCy pipeline and models for scientific/biomedical documents.

Organization: allenai

Home Page: https://allenai.github.io/scispacy/

scientific-documents spacy custom-pipes nlp biomedical bioinformatics

amzn / amazon-weak-ner-needle

biomedical,Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data

Organization: amzn

bert ner biomedical biomedical-named-entity-recognition weakly-supervised-learning weak-supervision distant-supervision

biomedical,This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variable Models", Harshil Shah and Julien Fauqueur, EMNLP SustaiNLP 2020.

Organization: benevolentai

nlp-machine-learning emnlp2020 biomedical information-extraction probabilistic-models representation-learning

biocypher / biocypher

biomedical,A unifying framework for biomedical research knowledge graphs

Organization: biocypher

Home Page: https://biocypher.org

bioinformatics biomedical knowledge-graph neo4j framework ontology postgresql rdf rdfs sql

bionlp-hzau / bionlp-corpus

biomedical,Repository used to collect biomedical corpus on the Internet!

Organization: bionlp-hzau

biomedical bionlp corpus

bmdsoftware / neji

biomedical,Flexible and powerful platform for biomedical information extraction from text

Organization: bmdsoftware

text-mining named-entity-recognition biomedical information-extraction concept-extraction java

borgwardtlab / s3m

biomedical,A software package for statistically significant shapelet mining

Organization: borgwardtlab

time-series time-series-analysis time-series-analysis-tool significant-pattern-mining shapelets biomedical-data-science biomedical

cambridgeltl / visual-med-alpaca

biomedical,Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.

Organization: cambridgeltl

Home Page: https://cambridgeltl.github.io/visual-med-alpaca/

biomedical biomedical-image-processing foundation-model large-language-models multimodal

caufieldjh / awesome-bioie

biomedical,🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

User: caufieldjh

awesome biomedical text-mining information-extraction nlp awesome-list biomedical-data biomedical-language medical-informatics natural-language-processing

chop-dbhi / data-models

biomedical,Collection of various biomedical data models in parseable formats.

Organization: chop-dbhi

Home Page: https://data-models-service.research.chop.edu

biomedical vocabulary csv schema data-models

correr-zhou / repmode

biomedical,[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".

User: correr-zhou

Home Page: https://arxiv.org/pdf/2212.10066.pdf

biomedical computer-vision cvpr2023 deep-learning dense-prediction machine-learning multi-task-learning

dlab-berkeley / r-deep-learning

biomedical,Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization

Organization: dlab-berkeley

Home Page: https://dlab-berkeley.github.io/Deep-Learning-in-R/slides.html

deep-learning keras tensorflow cloudml biomedical nlp

dreji18 / bio-epidemiology-ner

biomedical,Recognize bio-medical entities from a text corpus

User: dreji18

biomedical epidemiology ner nlp transformers

dterg / biomedical_corpora

biomedical,Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association detection). First version has was published as part of the paper: Dieter Galea, Ivan Laponogov, Kirill Veselkov; Exploiting and assessing multi-source data for supervised biomedical named entity recognition, Bioinformatics, bty152, https://doi.org/10.1093/bioinformatics/bty152 . If you would like to add other (or your) corpora, please submit a pull request and I'll happily approve it.

User: dterg

biomedical corpora corpus corpus-linguistics training-data

ericspod / eidolon

biomedical,Biomedical Visualization and Analysis Framework

User: ericspod

Home Page: https://ericspod.github.io/Eidolon/

python biomedical rendering data-analysis data-visualization king-college-london medical-imaging medical-image-computing image-registration irtk

fedbiomed / fedbiomed

biomedical,A collaborative learning framework for empowering biomedical research

Organization: fedbiomed

Home Page: https://fedbiomed.org

ai biomedical clinical federated learning analytics collaborative

ganjinzero / biobart

biomedical,BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]

User: ganjinzero

Home Page: https://arxiv.org/abs/2204.03905

biomedical generative pretrained-language-model

ganjinzero / kebiolm

biomedical,Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]

User: ganjinzero

Home Page: https://arxiv.org/abs/2104.10344

language-model pre-training nlp biomedical

gcy / atrial-fibrillation-detection-blood-pressure-monitor-oscillometric-method-

biomedical,Atrial Fibrillation Detection Blood Pressure Monitor (Oscillometric Method)

User: gcy

blood-pressure-monitor blood-pressure atrial-fibrillation pid-control pid-codes stm32f4 stm32 biomedical blood-pressure-measurment atrial-fibrillation-detection

gcy / pulse-oximeter-with-max3010x

biomedical,This project is MAX3010x library for STM32F4

User: gcy

biomedical biomedical-engineering biomedical-signal-processing max30100 max30102 oximeter pulse-oximeter stm32f4 stm32f407g-discovery wxwidgets wxwidgets-applications

gcy / wxecganalyzer

biomedical,This project is for Electrocardiogram(ECG) signal algorithms design and validation, include preprocessing, QRS-Complex detection, embedded system validation, ECG segmentation, label your machine learning dataset, and clinical trial...etc.

User: gcy

Home Page: http://gcyrobot.blogspot.com/2019/09/wxecganalyzer-cross-platform-ecg-signal.html

qrs-detection heart-rate-variability ecg tompkins labeling pan-tompkins electrocardiogram signal chen-algorithm stm32f4

grimmlab / microbiomebestpracticereview

biomedical,Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

Organization: grimmlab

Home Page: https://www.bit.cs.tum.de/

microbiome microbiome-analysis microbiome-workflow biomedical best-practices pipeline bioinformatics amplicon-sequencing assembly 16s-rrna

hemelb-codes / hemelb

biomedical,A high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries

Organization: hemelb-codes

lattice-boltzmann hemodynamics blood-vessels hpc biomedical

ibt-fmi / samri

biomedical,Small Animal Magnetic Resonance Imaging via Python.

Organization: ibt-fmi

biomedical fmri functional-connectivity dwi bids fsl neuroimaging small-animals rodent registration

kbogas / medknow

biomedical,Medical Relations and Entities Extraction

User: kbogas

nlp biomedical neo4j semrep metamap relation-extraction umls

kvslab / morphman

biomedical,A collection of tools for manipulation of morphological features in patient-specific geometries

Organization: kvslab

Home Page: https://morphman.readthedocs.io/

geometric-algorithms morphology vascular biomedical

kyegomez / med-palm

biomedical,Towards Generalist Biomedical AI

User: kyegomez

Home Page: https://discord.gg/qUtxnK2NMf

biomedical deep-learning gpt4 multimodal multimodal-deep-learning multimodality opensource

lee-gihun / mediar

biomedical,(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

User: lee-gihun

biomedical cell-biology cell-segmentation instance-segmentation monai multi-modality neurips-2022 pytorch pytorch-implementation pytorch-segmentation

mousavisajad / sleepeegnet

biomedical,SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach

User: mousavisajad

sleep-stage-scoring eeg deep-learning sequence-to-sequence cnn rnn tensorflow biomedical biosignals

openlifescience-ai / ai-deadlines

biomedical,

Organization: openlifescience-ai

Home Page: https://openlifescience-ai.github.io/ai-deadlines

acl acm conferences healthcare biomedical clinical clinical-research clinical-trials medical-imaging medical-research

patverga / bran

biomedical,Full abstract relation extraction from biological texts with bi-affine relation attention networks

User: patverga

tensorflow relation-extraction biomedical

plantl-gob-es / lm-biomedical-clinical-es

biomedical,Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).

Organization: plantl-gob-es

nlp transformers language-model biomedical clinical spanish corpora

pluslabnlp / geanet-biomed-event-extraction

biomedical,Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs

Organization: pluslabnlp

Home Page: https://vnpeng.net/members/

event-extraction biomedical covid-19 cord-19 natural-language-processing bert multitask-learning deep-learning

prakhargurawa / drug-similarity-and-link-prediction-using-graph-embeddings-on-medical-knowledge-graph

biomedical,Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.

User: prakhargurawa

ampligraph neural-network graphs knowledge-graph graph-neural-networks machine-learning biomedical graph-convolutional-networks kegg link-prediction

raamana / pyradigm

biomedical,Research data management in biomedical and machine learning applications

User: raamana

Home Page: http://raamana.github.io/pyradigm/

machine-learning workflow automation python datastructures userfriendly pandas datascience machine-learning-workflows medical-data

sauravmishra1710 / u-net---biomedical-image-segmentation

biomedical, Implementation of the paper titled - U-Net: Convolutional Networks for Biomedical Image Segmentation @ https://arxiv.org/abs/1505.04597

User: sauravmishra1710

cnn biomedical biomedical-image-processing segmentation image-processing image-segmentation unet-image-segmentation unet unet-segmentation unet-pytorch

sciinstitute / scirun

biomedical,SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.

Organization: sciinstitute

Home Page: http://scirun.org

c-plus-plus visualization mesh-generation scientific-computing scientific-visualization scientific-computations dataflow-programming python linear-systems forward-problem

sleyai / biomedical-segmentation-with-pytorch

biomedical,Biomedical Segmentation with PyTorch and different Convolutional Neural Network Architectures.

User: sleyai

pytorch u-net machine-learning python biomedical semantic-segmentation medical convolutional-neural-networks

som-shahlab / trove

biomedical,Weakly supervised medical named entity classification

Organization: som-shahlab

weak-supervision weakly-supervised-learning pseudo-labeling bert learning-with-noisy-labels ner text-classification biomedical umls umls-metathesaurus

svjan5 / medtype

biomedical,MedType: Improving Medical Entity Linking with Semantic Type Prediction

User: svjan5

entity-linking bert-as-service pytorch biomedical medical state-of-the-art deep-learning

thechymera / behaviopy

biomedical,Behavioral data analysis and plotting in Python.

User: thechymera

animal-behavior data-science plotting multimodality foss biomedical

tuttelikz / farabio

biomedical,:robot: PyTorch toolkit for biomedical imaging :heart:

User: tuttelikz

Home Page: https://farabio.readthedocs.io

deep-learning pytorch python biomedical-imaging biomedical models datasets

typedb-osi / typedb-bio

biomedical,TypeDB Bio: Biomedical Knowledge Graph

Organization: typedb-osi

bioinformatics knowledge-graph knowledge-base drug-discovery biomedical knowledge-discovery

uvacsl / hemocell

biomedical,HemoCell is a high-performance suspension code for simulating blood flows developed by the Computational Science Lab at the University of Amsterdam.

Organization: uvacsl

Home Page: https://computationalscience.nl

biomedical blood-flow hemodynamics hpc lattice-boltzmann