Topic: infectious-diseases Goto Github
Some thing interesting about infectious-diseases
Some thing interesting about infectious-diseases
infectious-diseases,Based on labeled data, multi-class and multi-label scoring of outbreak detection, annotation or prediction algorithms.
User: aauss
infectious-diseases,Predict plasmids from uncorrected long read data
User: andrewjpage
infectious-diseases,Simulating epidemics using Python
User: antonin-lfv
infectious-diseases,Slides and Practicals for the BIDD modelling short course
Organization: bristolmathmodellers
Home Page: https://bristolmathmodellers.github.io/biddmodellingcourse/
infectious-diseases,Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
Organization: chanzuckerberg
Home Page: https://idseq.net
infectious-diseases,Infectious Disease Sequencing Platform
Organization: chanzuckerberg
Home Page: https://czid.org/
infectious-diseases,IDseq infectious disease command-line interface
Organization: chanzuckerberg
infectious-diseases,CIDO: Coronavirus Infectious Disease Ontology
Organization: cido-ontology
Home Page: https://obofoundry.org/ontology/cido.html
infectious-diseases,CRAN Task View: Epidemiology
Organization: cran-task-views
Home Page: https://CRAN.R-project.org/view=Epidemiology
infectious-diseases,Unified COVID-19 Dataset
User: cssegisanddata
infectious-diseases,An RShiny App for mapping nCoV2019 line list data
Organization: emergent-epidemics
Home Page: https://scarpino.shinyapps.io/Emergent_Epidemics_Lab_nCoV2019/
infectious-diseases,Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
Organization: emergent-epidemics
infectious-diseases,A multivariate multi-step LSTM forecasting model for tuberculosis incidence with model explanation
User: enbinyang
infectious-diseases,Mathematical Modeling of Infectious Disease Dynamics
Organization: epimodel
Home Page: http://epimodel.org
infectious-diseases,A tool for modeling infectious diseases.
Organization: epispot
Home Page: https://epispot.github.io/epispot/en/latest/
infectious-diseases,Official website @ Github with content including COVID-19.
User: fudab
infectious-diseases,Create Contact Matrices from Population Data
Organization: idem-lab
Home Page: https://idem-lab.github.io/conmat/dev/
infectious-diseases,Simulation, visualization, and inference of individual level infectious disease models with Julia
User: jangevaare
infectious-diseases,Domain-Specific Modeling for Epidemiology
Organization: kendrickorg
infectious-diseases,Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional approaches
User: kpzoo
infectious-diseases,Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
User: mhoehle
infectious-diseases,R Package for individual based epidemiological models
Organization: mrc-ide
Home Page: https://mrc-ide.github.io/individual
infectious-diseases,Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
User: nickjcroucher
Home Page: http://nickjcroucher.github.io/gubbins/
infectious-diseases,Python SIR-x model implementation
Organization: open-sir
infectious-diseases,Mycobacterial pipeline
Organization: pathogen-genomics-cymru
infectious-diseases,Comparative TraDIS analysis
Organization: quadram-institute-bioscience
infectious-diseases,Order and orientation of complete bacterial genomes
Organization: quadram-institute-bioscience
Home Page: https://doi.org/10.1099/mgen.0.000396
infectious-diseases,Incidence Estimation Tools
Organization: sacema
infectious-diseases,Antimicrobial Resistance Identification By Assembly
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/ariba/
infectious-diseases,Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Artemis
infectious-diseases,Get assembly statistics from FASTA and FASTQ files
Organization: sanger-pathogens
infectious-diseases,Improve the quality of a denovo assembly by scaffolding and gap filling
Organization: sanger-pathogens
infectious-diseases,A set of tools to analyse the output from TraDIS analyses
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/Bio-Tradis/
infectious-diseases,A tool to circularize genome assemblies
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/circlator/
infectious-diseases,Python3 scripts to manipulate FASTA and FASTQ files
Organization: sanger-pathogens
infectious-diseases,Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/gff3toembl/
infectious-diseases,de novo virus assembler of Illumina paired reads
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/iva/
infectious-diseases,Multilocus sequence typing by blast using the schemes from PubMLST
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/mlst_check/
infectious-diseases,
Organization: sanger-pathogens
infectious-diseases,Assembling the cause of phenotypes and genotypes from NGS data
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/plasmidtron/
infectious-diseases,Rapid large-scale prokaryote pan genome analysis
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Roary
infectious-diseases,SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/saffrontree/
infectious-diseases,k-mer based Pipeline to identify the Serotype from Illumina NGS reads
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/seroba/
infectious-diseases,Finds SNP sites from a multi-FASTA alignment file
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/snp-sites/
infectious-diseases,Angular Frontend for the SORMAS project
Organization: sormas-foundation
Home Page: https://sormasorg.helmholtz-hzi.de/
infectious-diseases,SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
Organization: sormas-foundation
Home Page: https://sormas.org
infectious-diseases,Parallel computing: Infectious Disease Modeling with OpenMP. Agent based modelling on Undirected Acyclic graphs.
User: temp3rr0r
infectious-diseases,Detecção de COVID-19 a partir de imagens de raios X de tórax utilizando uma Deep Convolutional Neural Network otimizada.
User: toniesteves
Home Page: https://bit.ly/3aeX77s
infectious-diseases,COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.
Organization: unito-sepi
Home Page: https://www.epi.piemonte.it/
infectious-diseases,A visit-based contact tracing application built to consume healthcare encounter data.
Organization: vnsny-bia
Home Page: https://vnsny-bia.github.io/VisitContactTrace/
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