Topic: medical-image-segmentation Goto Github

👇 Here are 229 public repositories matching this topic...

amirhossein-kz / hiformer
medical-image-segmentation,HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation (WACV 2023)
User: amirhossein-kz
medical-image-segmentation transformers cell-segmentation multi-organ-segmentation semantic-segmentation skin-lesion-segmentation segpc cell-segmenation

angeloucn / caranet
medical-image-segmentation,Context Axial Reverse Attention Network for Small Medical Objects Segmentation
User: angeloucn
attention-mechanism context medical-image-segmentation small-object-segmentation

angeloucn / cfpnet-medicine
medical-image-segmentation,CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation
User: angeloucn
medical-image-segmentation real-time-semantic-segmentation keras python3 pytorch segmentation

angeloucn / dc-unet
medical-image-segmentation,We proposed a novel U-Net-based model -- DC-UNet to do medical image segmentation.
User: angeloucn
dc-unet medical-image-segmentation keras-tensorflow python3 dcunet pytorch segmentation

angeloucn / min_max_similarity
medical-image-segmentation,A contrastive learning based semi-supervised segmentation network for medical image segmentation
User: angeloucn
contrastive-learning semi-supervised-learning medical-image-segmentation surgical-tools-segmentation medical-video-analysis video-segmentation

bala93 / multi-task-deep-network
medical-image-segmentation,Usage of Multi-task deep learning network for semantic segmentation in medical images
User: bala93
deep-learning medical-image-segmentation pytorch

black0017 / medicalzoopytorch
medical-image-segmentation,A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
User: black0017
segmentation deep-learning pytorch medical-imaging medical-image-processing medical-image-segmentation 3d-convolutional-network brats2019 brats2018 densenet

bwgzk / cyclemix
medical-image-segmentation,[CVPR 2022] CycleMix: A Holistic Strategy for Medical Image Segmentation from Scribble Supervision
User: bwgzk
scribble segmentation mixup scribble-supervision medical-image-segmentation weakly-supervised-segmentation scribble-segmentation

confusezius / unet-lits-2d-pipeline
medical-image-segmentation,Liver Lesion Segmentation with 2D Unets
User: confusezius
deep-learning medical-image-segmentation unet-pytorch lesion-segmentation liver-segmentation unet semantic-segmentation

debeshjha / resunetplusplus
medical-image-segmentation,Official code for ResUNetplusplus for medical image segmentation (TensorFlow & Pytorch implementation)
User: debeshjha
Home Page: https://ieeexplore.ieee.org/abstract/document/8959021
unet tensorflow image-segmentation medical-image-segmentation unet-model resunet-architecture resunet resunet-plus-plus aspp attention

dengpingfan / pranet
medical-image-segmentation,PraNet: Parallel Reverse Attention Network for Polyp Segmentation, MICCAI 2020 (Oral). Code using Jittor Framework is available.
User: dengpingfan
Home Page: http://dpfan.net/PraNet
medical-image-segmentation polyp-segmentation reverse-attention deep-learning

fahadshamshad / awesome-transformers-in-medical-imaging
medical-image-segmentation,A collection of resources on applications of Transformers in Medical Imaging.
User: fahadshamshad
transformers vision-transformers medical-imaging medical-image-analysis clinical-report medical-report-generate deep-neural-networks medical-image-segmentation medical-image-classification medical-image-detection

frankkramer-lab / miscnn
medical-image-segmentation,A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
Organization: frankkramer-lab
deep-learning convolutional-neural-networks medical-image-processing medical-image-segmentation framework computer-vision clinical-decision-support tensorflow medical-image-analysis medical-imaging

frankkramer-lab / miseval
medical-image-segmentation,a metric library for Medical Image Segmentation EVALuation
Organization: frankkramer-lab
medical-image-segmentation segmentation evaluaton metrics reproducibility pip python statistics

gewelsji / vps
medical-image-segmentation,Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"
User: gewelsji
video-polyp-segmentation video-object-segmentation awesome-polyp-segmentation polyp-segmentation colonoscopy medical-image-segmentation medical-image-analysis pytorch deep-learning jittor

hilab-git / aceloss
medical-image-segmentation,Implementations of "Learning Euler's Elastica Model for Medical Image Segmentation"
Organization: hilab-git
active-contour-model medical-image-segmentation loss-functions

hilab-git / word
medical-image-segmentation,[MedIA2022]WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image
Organization: hilab-git
Home Page: https://www.sciencedirect.com/science/article/pii/S1361841522002705
medical-image-segmentation abdominal-organ-dataset annotation-efficient-learning dataset deep-learning

hilab-git / wsl4mis
medical-image-segmentation,Scribbles or Points-based weakly-supervised learning for medical image segmentation, a strong baseline, and tutorial for research and application.
Organization: hilab-git
weakly-supervised-learning weakly-supervised-segmentation medical-image-segmentation

jeya-maria-jose / kiu-net-pytorch
medical-image-segmentation,Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI
User: jeya-maria-jose
Home Page: https://sites.google.com/view/kiunet/kiu-net
segmentation medical-imaging semantic-segmentation deep-neural-networks pytorch deep-learning medical-image-segmentation kiunet brats lits-challenge

jeya-maria-jose / unext-pytorch
medical-image-segmentation,Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022
User: jeya-maria-jose
Home Page: https://jeya-maria-jose.github.io/UNext-web/
segmentation medical-image-segmentation medical-imaging deep-learning unet unet-image-segmentation mlp

jiwei0921 / mrnet
medical-image-segmentation,Code for CVPR 2021 paper. "Learning Calibrated Medical Image Segmentation via Multi-rater Agreement Modeling".
User: jiwei0921
mrnet medical-image-segmentation segmentation

josedolz / hyperdensenet
medical-image-segmentation,This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
User: josedolz
cnn fcn 3d-cnn convolutional-neural-networks hyperdensenet medical-image-processing segmentation image-segmentation deep-learning deep-neural-networks theano segment-medical-images 3d-convolutional-network deep-learning-algorithms brain-segmentation multi-modal-imaging densenet neural-networks medical-image-analysis medical-image-segmentation

josedolz / hyperdensenet_pytorch
medical-image-segmentation,Pytorch version of the HyperDenseNet deep neural network for multi-modal image segmentation
User: josedolz
hyperdensenet deep-learning 3d-convolutional-network 3d-cnn medical-image-processing medical-image-segmentation multi-modal-imaging multi-modal-learning segmentation image-segmentation

josedolz / livianet
medical-image-segmentation,This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
User: josedolz
cnn convolutional-neural-networks image-segmentation deep-learning medical-imaging 3d-convolutional-network 3d-cnn medical-image-processing convolutional-networks theano

junyuchen245 / unsuprevised_seg_via_cnn
medical-image-segmentation,An unsupervised (or self-supervised) loss function for binary image segmentation.
User: junyuchen245
image-segmentation-tensorflow keras-tensorflow medical-image-segmentation unsupervised-learning

kamalkraj / data-science-bowl-2018
medical-image-segmentation,DATA-SCIENCE-BOWL-2018 Find the nuclei in divergent images to advance medical discovery
User: kamalkraj
Home Page: https://www.kaggle.com/c/data-science-bowl-2018
kaggle-competition data-science-bowl-2018 keras python tensorflow u-net medical-image-segmentation jupyter-notebook google-colab colab data-science-bowl machine-learning

lescientifik / open_brats2020
medical-image-segmentation,Top 10 brats 2020 Solution
User: lescientifik
Home Page: https://arxiv.org/abs/2011.01045
deep-learning semantic-segmentation medical-imaging medical-image-segmentation pytorch unet brats brats-challenge

mic-dkfz / mednext
medical-image-segmentation,MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).
Organization: mic-dkfz
convnext medical-image-analysis medical-image-segmentation medical-imaging transformers unet-image-segmentation mednext

nitr098 / awesome-u-net
medical-image-segmentation,Official repo for Medical Image Segmentation Review: The success of U-Net
User: nitr098
medical-image-processing medical-image-segmentation segmentation-models transformer u-net unet-image-segmentation unet-pytorch

open-mmlab / mmsegmentation
medical-image-segmentation,OpenMMLab Semantic Segmentation Toolbox and Benchmark.
Organization: open-mmlab
Home Page: https://mmsegmentation.readthedocs.io/en/main/
semantic-segmentation pytorch pspnet deeplabv3 transformer swin-transformer realtime-segmentation vessel-segmentation retinal-vessel-segmentation image-segmentation

openmedlab / stu-net
medical-image-segmentation,The largest pre-trained medical image segmentation model (1.4B parameters) based on the largest public dataset (>100k annotations) to date.
Organization: openmedlab
foundation-models medical-image-segmentation pretrained-models

paddlecv-sig / medicalseg
medical-image-segmentation,MedicalSeg is an easy-to-use 3D medical image segmentation toolkit that supports the whole segmentation process. Specially, We provide data preprocessing acceleration, high precision model on COVID-19 CT scans dataset and MRISpineSeg spine dataset, and a 3D visualization demo based on itkwidgets.
Organization: paddlecv-sig
deep-learning medical-image-segmentation

paddlepaddle / paddleseg
medical-image-segmentation,Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.
Organization: paddlepaddle
Home Page: https://arxiv.org/abs/2101.06175
semantic-segmentation image-segmentation image-matting interactive-segmentation panoptic-segmentation transformer lane-detection autonomous-driving human-segmentation video-segmentation

plemeri / uacanet
medical-image-segmentation,Official PyTorch implementation of UACANet: Uncertainty Augmented Context Attention for Polyp Segmentation (ACMMM 2021)
User: plemeri
medical-image-segmentation polyp-segmentation acmmm2021

pykao / brats2018-tumor-segmentation
medical-image-segmentation,We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.
User: pykao
Home Page: https://www.researchgate.net/publication/326549702_Brain_Tumor_Segmentation_and_Tractographic_Feature_Extraction_from_Structural_MR_Images_for_Overall_Survival_Prediction?_sg=Omb1yK0vXPLUJ0Xx70tsfv1nTplmWLNvrZExSDIVnyVDNm3CLLGwEgUB7qjJ-MrwC6VqUvoNt-kPdQ.2
deepmedic pytorch pytorch-deepmedic pytorch-3d-unet brain-tumor-segmentaiton brats medical-image-segmentation 3d-unet deep-learning deep-neural-networks

razvandu / duck-net
medical-image-segmentation,Using DUCK-Net for polyp image segmentation. ( Nature Scientific Reports 2023 )
User: razvandu
computer-vision machine-learning medical-image-processing medical-image-segmentation medical-imaging polyp-segmentation polyp-segmentation-task segmentation tensorflow2 u-net

rezazad68 / bcdu-net
medical-image-segmentation,BCDU-Net : Medical Image Segmentation
User: rezazad68
lstm unet-keras abcdu-net segmentation medical-image-processing medical-image-segmentation lung-segmentation skin-lesion-segmentation retinal-vessel-segmentation deep-learning

rubics-xuan / transbts
medical-image-segmentation,This repo provides the official code for : 1) TransBTS: Multimodal Brain Tumor Segmentation Using Transformer (https://arxiv.org/abs/2103.04430) , accepted by MICCAI2021. 2) TransBTSV2: Towards Better and More Efficient Volumetric Segmentation of Medical Images(https://arxiv.org/abs/2201.12785).
User: rubics-xuan
pytorch medical-image-segmentation transformer

sharifamit / rvgan
medical-image-segmentation,[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network
User: sharifamit
keras tensorflow retinal-vessel-segmentation vessel-segmentation gan generative-adversarial-network generative-adversarial-networks conditional-gan medical-imaging medical-image-analysis

tamasino52 / unetr
medical-image-segmentation,Unofficial code base for UNETR: Transformers for 3D Medical Image Segmentation
User: tamasino52
3d-medical-imaging-segmentation semantic-segmentation medical-image-segmentation

twni2016 / organsegrstn_pytorch
medical-image-segmentation,PyTorch implementation of OrganSegRSTN - CVPR 2018
User: twni2016
Home Page: http://ccvl.jhu.edu/
coarse-to-fine medical-image-segmentation pytorch

umessen / salt
medical-image-segmentation,Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.
Organization: umessen
Home Page: https://ship-ai.ikim.nrw/
3d-segmentation medical-image-segmentation conditional-probabilities hierarchical-labels

uni-medical / stu-net
medical-image-segmentation,The largest pre-trained medical image segmentation model (1.4B parameters) based on the largest public dataset (>100k annotations), up until April 2023.
Organization: uni-medical
foundation-models medical-image-segmentation pretrained-models

vinairesearch / 3d-ucaps
medical-image-segmentation,3D-UCaps: 3D Capsules Unet for Volumetric Image Segmentation (MICCAI 2021)
Organization: vinairesearch
medical-image-segmentation capsule-network luna16 iseg-challenge hippocampus cardiac-segmentation capsnet segcaps unet

wurenkai / ultralight-vm-unet
medical-image-segmentation,[arXiv] The official code for "UltraLight VM-UNet: Parallel Vision Mamba Significantly Reduces Parameters for Skin Lesion Segmentation".
User: wurenkai
image-segmentation medical-image-processing medical-image-segmentation

xmindflow / awesome-implicit-neural-representations-in-medical-imaging
medical-image-segmentation,[ICCV 2023] A curated list of resources on implicit neural representations in Medical Imaging
Organization: xmindflow
Home Page: https://arxiv.org/abs/2307.16142
compression implicit-neural-representation inr medical nerf rendering segmentation reconstruction registration synthesis

xmindflow / awesome-transformer-in-medical-imaging
medical-image-segmentation,[MedIA Journal] An ultimately comprehensive paper list of Vision Transformer/Attention, including papers, codes, and related websites
Organization: xmindflow
attention-mechanism awesome-list computer-vision deep-learning medical-image-segmentation segmentation transformer transformers vision-transformer vit

xmindflow / daeformer
medical-image-segmentation,[MICCAI 2023] DAE-Former: Dual Attention-guided Efficient Transformer for Medical Image Segmentation
Organization: xmindflow
Home Page: https://arxiv.org/abs/2212.13504
efficient-transformers medical-image-analysis segmentation transformer medical-image-segmentation unet-image-segmentation deep-learning pytorch

yhygao / cbim-medical-image-segmentation
medical-image-segmentation,A PyTorch framework for medical image segmentation
User: yhygao
medical-imaging pytorch segmentation deep-learning medical-image-segmentation

zzzqzhou / dual-normalization
medical-image-segmentation,[CVPR‘22] Generalizable Cross-modality Medical Image Segmentation via Style Augmentation and Dual Normalization
User: zzzqzhou
domain-generalization medical-image-segmentation