Topic: topological-data-analysis Goto Github

👇 Here are 254 public repositories matching this topic...

aidos-lab / pytorch-topological
topological-data-analysis,A topological machine learning framework based on PyTorch
Organization: aidos-lab
Home Page: https://pytorch-topological.readthedocs.io/
deep-learning pytorch topological-data-analysis topological-machine-learning

aidos-lab / tardis
topological-data-analysis,TARDIS: Topological Algorithms for Robust DIscovery of Singularities
Organization: aidos-lab
Home Page: https://tardis-tda.readthedocs.io/en/latest/
anomaly-detection icml-2023 singularity-detection topological-data-analysis topological-machine-learning

anirudhsom / pi-net
topological-data-analysis,Python code to directly compute persistence images (PIs) from data (time-series or images) using deep learning.
User: anirudhsom
deep-learning computational-topology persistence-image persistence-images topological-data-analysis

borgwardtlab / p-wl
topological-data-analysis,A Persistent Weisfeiler–Lehman Procedure for Graph Classification
Organization: borgwardtlab
weisfeiler-lehman topological-data-analysis graph-classification persistent-homology graph-kernels machine-learning

borgwardtlab / topological-autoencoders
topological-data-analysis,Code for the paper "Topological Autoencoders" by Michael Moor, Max Horn, Bastian Rieck, and Karsten Borgwardt.
Organization: borgwardtlab
topological-data-analysis autoencoder tda persistent-homology

braindynamicslab / dyneusr
topological-data-analysis,Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)
Organization: braindynamicslab
Home Page: https://braindynamicslab.github.io/dyneusr
brain-dynamics topological-data-analysis neuroimaging brain-networks mapper-algorithm visualization

c-hofer / torchph
topological-data-analysis,The essence of my research, distilled for reusability. Enjoy 🥃!
User: c-hofer
Home Page: https://c-hofer.github.io/torchph/
pytorch deep-learning persistent-homology topological-data-analysis gpu differentiable-persistent-homology

camaralab / sctda
topological-data-analysis,An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
Organization: camaralab
single-cell-rna-seq topological-data-analysis

dillondaudert / umap.jl
topological-data-analysis,Uniform Manifold Approximation and Projection (UMAP) implementation in Julia
User: dillondaudert
umap julia dimensionality-reduction visualization machine-learning topological-data-analysis

ebanflo42 / persistence
topological-data-analysis,A topological data analysis library for Haskell
User: ebanflo42
topological-data-analysis topology library haskell

erdogant / findpeaks
topological-data-analysis,The detection of peaks and valleys in a 1d-vector or 2d-array (image)
User: erdogant
Home Page: https://erdogant.github.io/findpeaks
peak-detection mesh 3d-reconstruction topological-data-analysis topology mask peak-analysis denoising-images speckle-noise sar

fatemehtarashi / awesome-tda
topological-data-analysis,A curated list of topological data analysis (TDA) resources and links.
User: fatemehtarashi
awesome awesome-list machine-learning tda topological-data-analysis

giotto-ai / giotto-ph
topological-data-analysis,High performance implementation of Vietoris-Rips persistence.
Organization: giotto-ai
Home Page: https://giotto-ai.github.io/giotto-ph/
machine-learning computational-topology topological-data-analysis topology

giotto-ai / giotto-tda
topological-data-analysis,A high-performance topological machine learning toolbox in Python
Organization: giotto-ai
Home Page: https://giotto-ai.github.io/gtda-docs
topological-machine-learning topological-data-analysis machine-learning scikit-learn tda mapper topology computational-topology

gpz-bioinfo / tmap
topological-data-analysis,topological data analysis of population-scale microbiomes
Organization: gpz-bioinfo
Home Page: https://tmap.readthedocs.org
topological-data-analysis microbiome-analysis

gudhi / gudhi-devel
topological-data-analysis,The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.
Organization: gudhi
Home Page: https://gudhi.inria.fr/
topology tda topological-data-analysis python persistent-homology cpp17

hanssmail / quantq
topological-data-analysis,The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al.
User: hanssmail
kdb kdb-q machine-learning mathematical-functions bioinformatics algorithm deep-neural-networks quantum-computing topological-data-analysis

hyungkwonko / umato
topological-data-analysis,Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)
User: hyungkwonko
umato dimensionality-reduction visualization topological-data-analysis umap

ksanjeevan / mapper-tda
topological-data-analysis,Mapper implementation (Topological Data Analysis) in Python
User: ksanjeevan
topological-data-analysis

lait-cvlab / toppr
topological-data-analysis,NeurIPS 2023 - TopP&R: Robust Support Estimation Approach for Evaluating Fidelity and Diversity in Generative Models Official Code
Organization: lait-cvlab
Home Page: https://lait-cvlab.github.io/TopPR/
evaluation-metrics generative-model topological-data-analysis

lmcinnes / umap
topological-data-analysis,Uniform Manifold Approximation and Projection
User: lmcinnes
umap dimensionality-reduction visualization machine-learning topological-data-analysis

lordgrilo / aml-days-tda-tutorial
topological-data-analysis,
User: lordgrilo
data-science python3 tda topological-data-analysis tutorial

luisscoccola / persistable
topological-data-analysis,density-based clustering for exploratory data analysis based on multi-parameter persistence
User: luisscoccola
cluster-analysis clustering clustering-algorithm machine-learning machine-learning-algorithms topological-data-analysis unsupervised-learning

marrlab / shapr_torch
topological-data-analysis,SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"
Organization: marrlab
Home Page: https://shapr.topology.rocks
cubical-complexes deep-learning image-reconstruction persistent-homology pytorch segmentation topological-data-analysis topological-machine-learning

mtsch / ripserer.jl
topological-data-analysis,Flexible and efficient persistent homology computation.
User: mtsch
Home Page: https://mtsch.github.io/Ripserer.jl/dev/
persistent-homology topological-data-analysis homology cohomology tda ripser julia topology

multinetlab-amsterdam / network_tda_tutorial
topological-data-analysis,This repository is dedicated for the tutorial on network and topological neuroscience.
Organization: multinetlab-amsterdam
Home Page: https://lindadouw.com/
tda graph-theory topological-data-analysis fmri neuroscience neuroimaging

ognis1205 / spark-tda
topological-data-analysis,SparkTDA is a package for Apache Spark providing Topological Data Analysis Functionalities.
User: ognis1205
topological-data-analysis tda spark apache-spark machine-learning ml mllib

openantz / antz
topological-data-analysis,ANTz immersive 3D data visualization engine
Organization: openantz
Home Page: https://openantz.com
data-visualization data-analysis data-science openxr mixed-reality-toolkit visualization-tools visual-effects video-processing hyperglyphs topological-data-analysis

pierrebaudot / infotopopy
topological-data-analysis,computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep information networks
User: pierrebaudot
causal-inference complex complex-systems conditional-probability correlation deep-learning entropy information-cohomology information-theory information-topology mutual-information physics statistical-mechanics statistical-structures statistical-systems topological-data-analysis

pseudomanifold / aleph
topological-data-analysis,A library for exploring persistent homology
User: pseudomanifold
Home Page: https://pseudomanifold.github.io/Aleph/
persistent-homology topological-data-analysis c-plus-plus-11 persistence machine-learning

pyt-team / topomodelx
topological-data-analysis,Topological Deep Learning
Organization: pyt-team
cell-complex-networks cell-complex-neural-networks cxn graph-neural-networks higher-order-models higher-order-networks topological-data-analysis topological-deep-learning cw-networks simplicial-neural-networks

pyt-team / toponetx
topological-data-analysis,Computing on Topological Domains
Organization: pyt-team
Home Page: https://pyt-team.github.io/toponetx/
cell-complexes cw-complex-networks higher-order-networks simplicial-complex combinatorial-complex topological-deep-learning topological-learning cw-complex topological-data-analysis cellular-complex

ripser / ripser
topological-data-analysis,Ripser: efficient computation of Vietoris–Rips persistence barcodes
Organization: ripser
Home Page: http://ripser.org
computational-topology persistent-homology topological-data-analysis

rivettda / rivet
topological-data-analysis,RIVET is a tool for Topological Data Analysis, in particular two-parameter persistent homology.
Organization: rivettda
topological-data-analysis persistent-homology data-science data-visualization algebraic-topology

rodrgo / openph
topological-data-analysis,Parallel reduction of boundary matrices for Persistent Homology with CUDA
User: rodrgo
persistent-homology topological-data-analysis parallel-computing cuda gpu-computing numerical-computation

rrrlw / tdastats
topological-data-analysis,R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.
User: rrrlw
Home Page: https://rrrlw.github.io/TDAstats
topological-data-analysis homology-calculations cran ripser ggplot2 pipeline r persistent-homology tda homology

scikit-tda / kepler-mapper
topological-data-analysis,Kepler Mapper: A flexible Python implementation of the Mapper algorithm.
Organization: scikit-tda
Home Page: https://kepler-mapper.scikit-tda.org
data-visualization hacktoberfest kepler-mapper mapper-algorithm python tda topological-data-analysis visualization

scikit-tda / pervect
topological-data-analysis,Vectorization of persistence diagrams and approximate Wasserstein distance
Organization: scikit-tda
persistent-homology vectorizer wasserstein-metric python topology topological-data-analysis

scikit-tda / ripser.py
topological-data-analysis,A Lean Persistent Homology Library for Python
Organization: scikit-tda
Home Page: http://ripser.scikit-tda.org
topological-data-analysis persistent-homology homology topology tda data-science ripser

scikit-tda / scikit-tda
topological-data-analysis,Topological Data Analysis for Python🐍
Organization: scikit-tda
Home Page: https://docs.scikit-tda.org
topological-data-analysis scikit-tda mapper topology tda homology tda-python tda-libraries

scikit-tda / tadasets
topological-data-analysis,Synthetic data sets apt for Topological Data Analysis
Organization: scikit-tda
Home Page: http://tadasets.scikit-tda.org
dataset tda topological-data-analysis topology

shervinazadi / topogenesis
topological-data-analysis,Python Package for Generative Systems and Sciences
User: shervinazadi
Home Page: https://topogenesis.readthedocs.io/?badge=latest
generative python topological-data-analysis topology

stefaniaebli / simplicial_neural_networks
topological-data-analysis,Simplicial neural networks (SNNs), a generalization of graph neural networks to data that live on a class of topological spaces called simplicial complexes.
User: stefaniaebli
Home Page: https://arxiv.org/abs/2010.03633
graph-neural-networks deep-learning laplacian convolutional-neural-networks topological-data-analysis geometric-deep-learning

stephenhky / mogutda
topological-data-analysis,Topological Data Analysis in Python: Simplicial Complex
User: stephenhky
Home Page: https://mogutda.readthedocs.io/
tda python package topology homology topological-data-analysis

stephenhky / pytda
topological-data-analysis,Topological Data Analysis in Python
User: stephenhky
Home Page: https://github.com/stephenhky/MoguTDA
topological-data-analysis tda topology demo-codes python numerical-methods

tda-in-ml / tda-in-ml.github.io
topological-data-analysis,Code for the website of the NeurIPS 2020 workshop on 'Topological Data Analysis and Beyond'
Organization: tda-in-ml
Home Page: https://tda-in-ml.github.io/
neurips-2020 workshop jekyll-site tda theme machine-learning topological-data-analysis

topology-tool-kit / ttk
topological-data-analysis,TTK - Topological Data Analysis and Visualization - Source Code
User: topology-tool-kit
Home Page: https://topology-tool-kit.github.io/
c-plus-plus paraview python topological-data-analysis visualization vtk

wildart / tda.jl
topological-data-analysis,A Julia package for topological data analysis
User: wildart
topological-data-analysis visualization

wocomtoqc / wocomtoqc.github.io
topological-data-analysis,Code for the website of the Workshop on 'Workshop on Computational Topology & Quantum Computing' (WoComToQC).
Organization: wocomtoqc
quantum-computing topological-data-analysis graph-theory machine-learning python3 r statistics

yuki3-18 / topological-dvae
topological-data-analysis,An implementation of Denoising Variational AutoEncoder with Topological loss
User: yuki3-18
pytorch beta-vae denoising-autoencoders topological-data-analysis