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Welcome to my GitHub Page

About me

Career

  • Academia
    • PhD in Evolutionary Genomics.
      • The role genetic exchange and gene flow play in the adaptation of organisms to dynamic environments or situations such as "evolutionary arms-races".
    • Bioinformatician working on a wide range of problems and projects:
      • Population genomics of fungi using HiFi read data to construct de-novo genomes.
      • Development of a hybrid genome assembler framework.
      • Assembling complex polyploid genomes.
      • Assembling pangenomes.
  • Industry
    • Software and Infrastructure developer for Actuarial and Financial departments for a well-known UK GI Company.

Highlighted work

Software projects

  • BioJulia - Software infrastructure for Genomics & Bioinformatics
  • HybridCheck - R package for scripting scans for recombination regions in sequences.

TRΛNS-GIRL.C0DΞS's Projects

adegenet icon adegenet

adegenet: a R package for the multivariate analysis of genetic markers

airotic icon airotic

This is our design for a LED bluetooth bubbler bottle

ape icon ape

A mirror of ape - R package for phylogenteics

asub icon asub

A unified array job submitter for LSF, SGE/UGE and Slurm

automa.jl icon automa.jl

A julia code generator for regular expressions

bayestyper icon bayestyper

Method for variant graph genotyping based on exact alignment of k-mers

bio.jl icon bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

bio_sequences icon bio_sequences

A simple C++ library providing a flexible biological sequence class.

bio_symbols icon bio_symbols

A simple C++ shared library implementing biological symbol types

bioargparse.jl icon bioargparse.jl

Extension to ArgParse.jl, enabling parsing of command line parameters to types in Bio.jl.

biosequences icon biosequences

A simple C++ library for an efficient biological sequence representation.

bootmeanr icon bootmeanr

R script for conveniently computing summary stats and boot.ci of the mean from command line.

cactus icon cactus

Official home of genome aligner based upon notion of Cactus graphs

dat.jl icon dat.jl

Types and methods for interacting with Dat from the Julia REPL and programs.

decimal_vctrs icon decimal_vctrs

A box module defining an S3 vctr class for aritrary precision decimal arithmetic.

devbuildr icon devbuildr

Automated building of development versions of R-devel and Bioconductor.

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