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Welcome to my GitHub Page

About me

Career

  • Academia
    • PhD in Evolutionary Genomics.
      • The role genetic exchange and gene flow play in the adaptation of organisms to dynamic environments or situations such as "evolutionary arms-races".
    • Bioinformatician working on a wide range of problems and projects:
      • Population genomics of fungi using HiFi read data to construct de-novo genomes.
      • Development of a hybrid genome assembler framework.
      • Assembling complex polyploid genomes.
      • Assembling pangenomes.
  • Industry
    • Software and Infrastructure developer for Actuarial and Financial departments for a well-known UK GI Company.

Highlighted work

Software projects

  • BioJulia - Software infrastructure for Genomics & Bioinformatics
  • HybridCheck - R package for scripting scans for recombination regions in sequences.

TRΛNS-GIRL.C0DΞS's Projects

skelesim icon skelesim

Null models, performance testing, and power estimation with population simulations

snpsim icon snpsim

Simulation of SNP accumulation on sequences

taskbook icon taskbook

📓 Tasks, boards & notes for the command-line habitat

testrpkg icon testrpkg

A simple package for testing, developing, and providing reproducible examples.

tronco icon tronco

Repository of the TRanslational ONCOlogy library, which includes the CAPRESE and CAPRI algorithms.

twiddle.jl icon twiddle.jl

A collection of useful bit-twiddling tricks in Julia.

twisst icon twisst

Topology weighting by iterative sampling of sub-trees

w2rap-contigger icon w2rap-contigger

An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

yggdrasil icon yggdrasil

Collection of builder repositories for BinaryBuilder.jl

z88dk icon z88dk

The development kit for over eighty z80 family machines - c compiler, assembler, linker, libraries.

zgb icon zgb

Game Boy / Color engine with lots of features

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