transgirlcodes / twiddle.jl

A collection of useful bit-twiddling tricks in Julia.

Twiddle.jl

Description

Twiddle is a package collecting useful bit-twiddling tricks, ready to use as functions, with detailed documentation of what they do, and example real-world use cases.

This package originated from a PostDoc project where we wanted to do some common biological sequence operations much much faster than a naive implementation could, by taking advantage of succinct bit-encoding of the sequences.

This package however is supposed to be more general, and we want it to contain many bit-twiddling tips and tricks.

Installation

Install Twiddle.jl from the Julia REPL:

using Pkg
Pkg.add("Twiddle")

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

twiddle.jl's Issues

Error tagging new release

The URL of this package does not match that stored in METADATA.jl.
cc: @benjward

Release a new version

A thread for asking the Registrator bot to make releases.

Error tagging new release

The REQUIRE file could not be found.
cc: @Ward9250

Doc link in description is incorrect

It currently points to https://BenJWard.github.io/Twiddle.jl/, but should point to https://ben-ward.science/Twiddle.jl/stable/

ERROR: Twiddle: fetch failed to get commit 29a0b6f234, please file an issue at https://github.com/Ward9250/Twiddle.jl/issues

In julia 0.5.2, I got the following when running Pkg.update()

INFO: Upgrading Twiddle: v0.3.1 => v0.4.0
INFO: Rolling back TexExtensions from v0.1.0 to v0.0.3
INFO: Rolling back StatsBase from v0.17.0 to v0.16.1
INFO: Rolling back SpecialFunctions from v0.2.0 to v0.1.1
INFO: Rolling back install of ScikitLearn
INFO: Rolling back Requests from v0.5.0 to v0.4.1
INFO: Rolling back PyCall from v1.14.0 to v1.13.0
INFO: Rolling back install of Parameters
INFO: Rolling back PairwiseListMatrices from v0.5.1 to v0.4.0
INFO: Rolling back install of NamedArrays
INFO: Rolling back NaNMath from v0.2.6 to v0.2.5
INFO: Rolling back JSON from v0.13.0 to v0.12.0
INFO: Rolling back IntervalSets from v0.1.1 to v0.0.5
INFO: Rolling back HttpParser from v0.3.0 to v0.2.0
INFO: Rolling back FileIO from v0.5.1 to v0.4.1
INFO: Rolling back FTPClient from v0.2.1 to v0.1.1
INFO: Rolling back EzXML from v0.4.4 to v0.4.3
INFO: Rolling back DataStructures from v0.6.0 to v0.5.3
INFO: Rolling back DataFramesMeta from v0.2.0 to v0.1.3
INFO: Rolling back Colors from v0.7.4 to v0.7.3
INFO: Rolling back ColorTypes from v0.5.2 to v0.5.1
INFO: Rolling back BioSymbols from v1.1.1 to v1.1.0
INFO: Rolling back BioSequences from v0.6.3 to v0.6.2
INFO: Rolling back BioCore from v1.2.0 to v1.1.0
INFO: Rolling back AxisArrays from v0.1.4 to v0.1.3
INFO: Rolling back Automa from v0.3.0 to v0.2.4
ERROR: Twiddle: fetch failed to get commit 29a0b6f234, please file an issue at https://github.com/Ward9250/Twiddle.jl/issues
 in edit(::Function, ::String, ::Base.Pkg.Types.VersionSet, ::Vararg{Base.Pkg.Types.VersionSet,N}) at ./pkg/entry.jl:30
 in (::Base.Pkg.Entry.##2#5{String,Base.Pkg.Types.VersionSet})() at ./task.jl:360
 in macro expansion at ./task.jl:327 [inlined]
 in add(::String, ::Base.Pkg.Types.VersionSet) at ./pkg/entry.jl:51
 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}})() at ./pkg/dir.jl:31
 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#add,Tuple{String}}, ::String) at ./file.jl:59
 in add(::String) at ./pkg/pkg.jl:100
 in eval_user_input(::Any, ::Base.REPL.REPLBackend) at ./REPL.jl:64
 in macro expansion at ./REPL.jl:95 [inlined]
 in (::Base.REPL.##3#4{Base.REPL.REPLBackend})() at ./event.jl:68