tripal Goto Github PK
Name: Tripal
Type: Organization
Bio: An open-source toolkit for construction of genomic, genetic, breeding and biological databases.
Blog: http://tripal.info
Name: Tripal
Type: Organization
Bio: An open-source toolkit for construction of genomic, genetic, breeding and biological databases.
Blog: http://tripal.info
Breeding API client-server implementation (v1 & v2) for Tripal
Tripal fields to display content linked to a different content type through linker tables
Mainlab Chado Search: enabling advanced search function for a Tripal/Chado database
Docker container for Tripal 2 and Tripal 3
A composer tool for easily generating Tripal Fields
Mainlab Chado Loader
Mainlab Tripal Data Display: extending the display of a Tripal database
Make individual pages private while others of the same Tripal Content Type remain public!
Provides a GitHub Action to setup a basic Tripal site in your GitHub Action Workflows.
This is a temporary repository for Drupal 9 upgrade for Tripal v4. It is meant to house issues related to the upgrade.
Provides a Github Action to make automated testing workflows for Tripal Extension modules easy!
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
Experimental code for a services-driven approach to Tripal 4
This module extends the Tripal Analysis Module and provides a method for loading XML results from the NCBI blast program. Blast results appear on each feature page.
Extension module for the Tripal toolset to show differential expression data. This module was made for Drupal 7, Tripal 3, and Chado 1.3.
This module is responsible for displaying reports from Gene Ontology (GO) analyses. This module contains a Gene Ontology Annotation Format (GAF) file loader to import GO terms assigned to features. Otherwise, GO assignments must already be loaded into the Tripal database using other data loaders (e.g. using the Tripal InterPro Analysis module or a GFF file)
This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.
This module extends the Tripal Analysis Module and provides a method for loading of KEGG ortholog assignments derived from the KEGG Automated Annotation Server (KAAS). The module reads the compressed .heir file or alternatively an expanded heir directory. KEGG assignments appear on each feature page, and a full KEGG report is available for browsing results once uploaded.
DEPRECATED. This module is no longer needed for Tripal v3. Only major bug fixes will be considered for Tripal v2 sites that still use it. But, in summary, This module extends the Tripal v2 Analysis Module and provides visualization of Unigenes derived from ESTs.
Provides a field storage implementation for BAM files.
Provides an user interface to BLAST on Tripal sites.
Design Documentation for Tripal in markdown
Provides tools to make development of Tripal extension modules easier!
Official Documentation for the Tripal Platform
An example module released during PAG 2017 hackathon, that displays a D3JS tree from the phylonode table.
Manages site-wide files and associates them with content in a Tripal site.
This module is for integration of Tripal and a remote Galaxy Instance.
provides an API for developing consistent biological diagrams with a common configuration, as well as, providing some common diagrams such as pie, bar, column and pedigree diagrams.
Handle drupal bootstrapping, load environment variables, and easily wrap your tests in DB transactions.
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