tripal Goto Github PK
Name: Tripal
Type: Organization
Bio: An open-source toolkit for construction of genomic, genetic, breeding and biological databases.
Blog: http://tripal.info
Tripal's Projects
tripal_genetic
Extends core Tripal with support focused on genotypic data, genetic markers, sequence variants, etc.
tripal_go
go enrichment for tripal
tripal_install
Tripal Install Profiles
tripal_jbrowse
Drupal/Tripal: Drupal integration for GMOD JBrowse instances.
tripal_network
Provides Tripal integration of biological networks including storage, loaders and visualzations
tripal_pathway
pathway enrichment analysis
tripal_remote_job
A Tripal module, Tripal Remote Job can be used to launch jobs on external/remote servers to avoid overloading the webserver.
tripal_scidas
Integration of Tripal with the SciDAS Nextflow API
tripal_sequence_similarity_search
This module supports sequence similarity search on a Tripal website through a new dual application option. The Tripal module provides access to the speed increase available through Diamond for BLASTP/BLASTX style searches as well as traditional NCBI BLAST for BLASTN. Both applications are integrated into a single interface that provides file upload or copy/paste sequence support for the query and access to formatted databases for NCBI BLAST or Diamond. The target databases can be customized for the categories of whole genome, gene, protein, and transcriptome/unigene. The administration interface allows the admin user to set what pre-indexed databases are available (which show up in a dropdown menu). The module supports execution of the searches on a remote machine so that the search is not running directly on the limited resources typically associated with web servers.
tripal_simpletest
This module can be used to develop functional tests on Tripal extensions that can be run on an existing site without disturbing its content. It's compatible with Drupal native test system.
tripal_synview
synteny viewer
trpdownload_api
An API for implementing download functionality.
trpfancy_fields
Provide additional fields to jazz up your Tripal Content Pages!
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