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formatdb or makeblastdb? about tripal_blast HOT 3 CLOSED

kyrenya avatar kyrenya commented on July 25, 2024
formatdb or makeblastdb?

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laceysanderson avatar laceysanderson commented on July 25, 2024 1

To my understanding they are equivalent with makeblastdb being the newer version of formatdb. So it should not make a difference. Most of the testing was done with formatdb but we are just moving to makeblastdb ourselves.

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kyrenya avatar kyrenya commented on July 25, 2024

good! Thanks!
for me it worked! as it worked, I didnt went to deep in that, but I think it might have some impact when we are configuring the database in tripal saying if has the NCBI format
image
but I'm not sure because I didn't try it.

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laceysanderson avatar laceysanderson commented on July 25, 2024

I'm going to close this issue. I've used both options with no bad effects but if you run into any problems feel free to comment back here 👍

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