Small WGS dataset for testing bacterial outbreak analysis pipelines
There are already good curated WGS data sets for bacterial outbreaks. These are real full-sized FASTQ files which are too large for quick local testing or within continuous integration (CI) environments like TRAVIS-CI and CIRCLE.
This project aims to be small but complete:
- More than 10 isolates, which can be sub-setted
- Different reference genomes
- Small genome sizes < 100 kbp
- Each genome
- MLST typeable
- 0+ AMR genes
- 0+ virulence genes
Coming soon.
mini-outbreak is free software, released under the GPL 3.0.
Please submit suggestions and bug reports to the Issue Tracker