ttdtrang / data-rnaseq-sarcoma Goto Github PK

Thank you for providing this set of repositories and the normalization testing package. I am interested in comparing the Network Centrality Scaling approach to TMM, and have been able to load the lymphoma data for this purpose. However, I have not been able to load this package, even though the two packages have similar instructions. This package appears to contain .rda files, not .rds files, for the relevant data. I am not very familiar with Bioconductor or with .rda files, and I am not able to overcome this error. Could you please update this data so that it loads properly?

To be specific, neither of the first two lines of the following code chunk from the README.md succeeds without error:

devtools::install_github('ttdtrang/data-rnaseq-sarcoma')
data(sarcoma.rnaseq.gene, package='data.rnaseq.sarcoma')
dim(sarcoma.rnaseq.gene.kallisto@assayData$exprs)