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regnmf

regulator

R package to detect correlated changes across phenotypes by sparse filtered regression

remotes

Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs

restfulse

demonstration of SummarizedExperiment with assay component retrieved from remote HDF5 server

revolver

REVOLVER - Repeated Evolution in Cancer

rgammagamma

Gamma convolutions for background correction

rhtslib

HTSlib high-throughput sequencing library as an R package

rigraph

igraph R package

roxpkg

demonstration of weirdness observed in roxygen2 5.0.0

rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

rscripts

contents of my ~/.Rscripts folder, minus private ones with account numbers. Packaged up by Asif Zubair!

rsection

port of DSection to R using cppBugs and a DP prior on k

rsite

A clean, modern website for R using Bootstrap3 and Slidify

rstructurama

hooks Structurama into R via Rcpp

rtcgatoolbox

rtsne

An R package for t-SNE (t-Distributed Stochastic Neighbor Embedding)

scchromhmm

🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.

scgate

marker-based purification of cell types from single-cell RNA-seq datasets

schemas

Work on data models and APIs for Genomic data.

sciclone

An R package for inferring the subclonal architecture of tumors

scnmf

Single cell non-negative matrix factorization toolkit

sesame

R package for analyzing Infinium DNA methylation BeadChip data

seurat

R toolkit for single cell genomics

shannon

RNA-Seq

shinybifurcator

shiny interface for bifurcatoR

sigopt-examples

Optimization Examples with SigOpt

simplesamplesearch

a trivial R package to search GEO and SRA without the huge hassle of the NCBI interfaces

simulatorz

simulates collections of independent genomic data sets, and performs training and validation with predicting algorithms

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

siq-chip

A sans spike-in quantitative ChIP-seq