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Home Page: https://turowskilab.github.io/trxtools/
License: Other
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Home Page: https://turowskilab.github.io/trxtools/
License: Other
~/anaconda3/lib/python3.9/site-packages/trxtools/go_enrichment.py in get_enrichment(query_genes, organism, use_reference_set, ref_genes, ref_organism, go_dataset, test_type, correction)
77 response = requests.post('http://pantherdb.org/services/oai/pantherdb/enrich/overrep', data=query)
78 ## extract data to a dataframe
---> 79 return pd.json_normalize(response.json()['results']['result'])
KeyError: 'results'
Currently using RNA folding functions seems to change python's (kernel's) working directory to ~ without telling the user.
Maybe it should be worth adding an option to specify the directory for temp files manually or set it automatically in the notebook's dir.
FutureWarning: iteritems is deprecated and will be removed in a future version. Use .items instead.
While trying to run tt.nascent.Fold().RNAfold(df00)
Exception: b'/bin/sh: 1: tab2fasta.awk: Permission denied'. Code: 127
Ship awk script with repo or hardcode functionality in module
Chiefly in nascent.py but could be elsewhere as well
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