uab-cgds-worthey / public-cgds-repo-discovery

An organized listing of public repositories within CGDS to help with discovery of works completed by CGDS.

CGDS Repository Discovery

Greetings! This repositiory contains an automatically updated listing (in the form or this README) and logical organization of all repositiories owned/mainteined by CGDS. You can discovery more information on what's being worked on within the organization through a quick review of this document or navigate to a specific section if you know what type of tool, software, analysis, workflow, etc. you're looking for in specific. You can learn more about how this repo was setup and how it's automagically populated by checking out the setup instructions. The setup instructions also contain details on customizing the setup of this README and how repos are queried and listed.

Software Development

DevOps

• .github - The Center for Computational Genomics and Data Science (CGDS) seeks to develop and apply tools and methods to uncover new and novel information that provide benefits for patients suffering from rare, undiagnosed, or misdiagnosed diseases, their families, and the people that care for them. - Repo Topics: devops
• Public-CGDS-Repo-Discovery - An organized listing of public repositories within CGDS to help with discovery of works completed by CGDS. - Repo Topics: devops
• cgds-domain-home-page - The base HTML page and to be packaged and deployed to cgds.uab.edu - Repo Topics: devops

SciOps

• DITTO - Variant Deleteriousness prediction tool using AI - Repo Topics: sciops, ditto
• DITTO-API - This is the API for serving up DITTO scores and hosting on Cloud.rc at UAB. - Repo Topics: ditto, sciops
• DITTO-UI - Easy to use web interface for biologists to look for genetic variants and understand their deleteriousness using DITTO scores. - Repo Topics: streamlit-webapp, pathogenic-variants, rare-disease, bioinformatics, clinvar, ditto, genomics, precision-medicine, sciops

Pipelines

• quac - 🦆 Quality Control of WGS and exome samples 🦆 - Repo Topics: pipeline

Support

• cgds_repo_template - Template repo for CGDS repos. Visit the webpage below for usage instructions. - Repo Topics: support
• learnings_journal - Tips and tricks we learn at CGDS to get stuff working - Repo Topics: support

Miscellaneous

• mixoviz - Detection and visualization of 2n/3n mixoploidy from a VCF - Repo Topics:
• rosalution - Rosalution assists researchers study genetic variation 🧬 in patients 🧑🏾‍🤝‍🧑🏼 by helping select candidate animal models 🐀🐁🐠🪱 to replicate the variation to further research to derive, diagnose, and provide therapies for ultra-rare diseases. Developed by the UAB Center for Computational Genomics and Data Science (CGDS). - Repo Topics:
• shareops-self-hosted-runners-demo - Weeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee - Repo Topics: