ucsf-bmi-203-2021 / project1

Project 1 - Sequence Alignment

Due 01/27/2021

In this assignment, you will implement two classical alignment algorithms and then evaluate each algorithm’s performance with a range of parameters. There are two parts to this assignment and Part 2 requires completion of Part 1. We recommend reading through both Part 1 and Part 2 before beginning this assignment.

• Part 1 - API and implementation
• Part 2 - Evaluating alignments

main

Runs all code in align/__main__.py, useful for part 2

python -m align

testing

Testing is as simple as running

python -m pytest test/*

from the root directory of this project.