umasshokie / pvpscripts

scripts for testing PVP code on GridEngine

PVPScripts

scripts for testing PVP code on GridEngine

Types of scripts:

• Scripts labeled by number run a specific set of model parameters
• run* scripts are for running certain numbered scripts
• scripts assume you are on a cluster running GridEngine
• all other scripts are for analyzing results

To run your code:

• These run scripts must be in the mason folder
• There must be a results folder at the same level as the mason folder
• Code must be in mason/sim/app/[package name]
• Code must already be compiled
• modify runparamsall.sh with name of results folder, alpha, gamma, epsilon (if relevant)
• run the scripts by typing "./runparamsall.sh" from the mason folder

To analyze results from your experiments:

• Ensure all analysis scripts are in the results folder
• Create a folder named "pops" in results folder if you do not already have one
• Verify that all of your jobs have finished by typing "qstat". There should be nothing running with your username linked to it.
• Go to results folder (~/results, probably)
• Run process.sh
• all results summary files are in pops directory. You will want to scp them to your own computer to analyze further.
• move all folders created from your experiments from the results folder to a folder named "processed" which is in (~/processed)

****Do not delete your results files, as we will need to keep them as experimental data

Directory structure:

• results
• • pops
• • all analysis scripts
• mason
• • all running scripts
• • sim
• • • app
• • • • [package name]
• • • • • java code & executable file