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Unipept

The Unipept web application supports biodiversity and functional analysis of large and complex metaproteome samples and the analysis of peptidomes.

The 4.0 release of Unipept brings functional analysis to the tool.

An API and command line tool are available for integration in other programs.

Contributing

Found a bug or have an idea for an awesome new feature? File an issue using the github issue tracker or drop us a line at [email protected].

If you're willing to get your hands dirty, you might of course also send us a pull request!

Installation

This application is deployed and fully functional at unipept.ugent.be. If for some reason you wish to run your own instance, you can do so by deploying this rails application and setting up a database. This isn't straightforward and you'll probably want some help, so contact us at [email protected] before you attempt an installation.

Check our Wiki-pages for a variety of different installation guides.

Who made this app?

Unipept is a research project of the computational biology group at Ghent University. If you use this application, please cite:

Current team:

  • Bart Mesuere (@bmesuere): Postdoc and lead developer
  • Pieter Verschaffelt (@pverscha): PhD student
  • Tibo Vande Moortele (@tibvdm): PhD student
  • Peter Dawyndt (@pdawyndt): Group leader and PhD supervisor

Other contributions from:

  • Felix Van der Jeugt (@ninewise): Master's student 2014 - 2016 and PhD student 2016 - 2022
  • Robbert Gurdeep Singh (@beardhatcode): Developer 2017-2018
  • Tom Naessens (@silox): Master's student 2014-2015
  • Toon Willems (@nudded): Master's student 2013-2014
  • Ewan Higgs (@ehiggs): Ghent University HPC team
  • Peter Vandamme: PhD co-supervisor of Bart
  • Bart Devreese: PhD co-supervisor of Bart

For code contributions, the contributors graph is the place to be.

Unipept's Projects

docker-images icon docker-images

A collection of Docker-containers that support the inner workings of the Unipept project.

eslint-config icon eslint-config

The ESLint configuration that's shared over all Unipept projects. This configuration is specifically aimed at projects that are using TypeScript and Vue.

fraggenescanrs icon fraggenescanrs

Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

umgap icon umgap

A taxonomic classifier for shotgun metagenomics reads

unipept icon unipept

A Ruby on Rails application for proteomics data analysis

unipept-desktop icon unipept-desktop

This is the desktop application that accompanies the Unipept project.

unipept-utilities icon unipept-utilities

A repository containing some utility scripts that are used for server administration, deployment and other management related tasks.

unipept-web-components icon unipept-web-components

This repository contains isolated Vue-components that can be reused throughout multiple Unipept-projects.

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