uofs-pulse-binfo / tripal_citation Goto Github PK

1. Try resolving the token when there is no publication link.
2. Collapse to blank entry for missing tokens.

For genome assemblies we are using the current citation template:

{tripal_pub:Authors} (RELEASE DATE) {taxonomic_rank:genus} {taxonomic_rank:species}: GERMPLASM NAME genome assembly ({local:abbreviation}, version {IAO:version number}) [dataset]. {NCIT:Data Source}. Retrieved from {CURRENT_URL}

However, the RELEASE DATE and GERMPLASM NAME are actually stored in the analysis table itself -not as properties or publications. Specifically, the release date is the analysis.timeexecuted column with special formatting and the germplasm name is the analysis.sourcename column.

I'm wondering if the most generic approach might be to allow field machine names as tokens. For these two that would mean using the tokens {local__time_executed} and {local__source_data} respectively. We could also use {FIELD:field_name} is that were easier to parse. This allows us to get around the formatting for things like the analysis.timeexecuted column since the field does that for us.