experimental-in-r's Introduction
***This is the user guide for the R package "researh".*** AUTHOR: Javier Castillo ISC 2012 - 5708 PUCMM INDEX: 1. DESCRIPTION 2. TARGET OS 3. REQUIREMENTS 4. INSTALLATION 4.1 IF PLACED IN CUSTOM DIRECTORY DESCRIPTION: This package is intended to provide support for scientific investigation concerning the way cane leaves capture water when it's raining. TARGET OS: This package was developed in Windows 10 and it has only been tested in this platform. REQUIREMENTS: These are this package dependencies. It is required that all dependencies are installed in order for the package to work properly. - RStudio 1.0.136 or higher: This is the recommended working environment for using the "research" package. - MongoDB 3.4 of higher: This package uses MongoDB as its database manager to permanently stored the data from the scientific research and its resulsts. - devtools 1.12.0: This R package enables the "research" package to be loaded into the R session without it being installed. - roxygen2 6.0.1: This R package enables a special in-line documentation for R scripts. - mongolite 1.1: This R package enables the connection between the "research" package and the MongoDB database. NOTE: It is advice to install MongoDB and the configure it as a Windows Service in order for it to start when the operating system boots up. For information in how to do follow the instructions in this page listed as "Configure a Windows Service for MongoDB Community Edition". (https://docs.mongodb.com/manual/tutorial/install-mongodb-on-windows/) INSTALLATION: This package doesn't requiere installation. This are the steps on how to set it up. These steps assume that all the packages and programs listed above are already installed in the working machine. 1. Place the folder "research" into the Documents directory in windows. Alternatively, you can place the folder within another directory of your preference, but it will requiere another step (see IF PLACED IN CUSTOM DIRECTORY). 2. Load the project using the reseach.Rproj file, placed within the research folder. This will open an new session on RStudio and load all dependencies including the package itself. IF PLACED IN CUSTOM DIRECTORY: As it is said in step 2, when the project is open with RStudio it loads all dependencies and the package itself. The way it does it is by sourcing the .Rprofile when the project is opening. If you place the "research" folder within another directory other than "Documents" (or My Documents), then will have to either source() the package from within the R session or change the .Rprofile file. These are the steps on how to change the .Rprofile file. 1. Look for the ".Rprofile" file in the "research" folder. 2. Open it with a code editor like Sublime Text, VS Code, etc. 3. Look for the function ".first". This is the function responsible for loading the libraries that the package is going to use. 4. Within the ".first" function, look for the statement "load_all("~\\research\\R")". This is what you are going to change. 5. Change the path inside to where the folder actually is. Be sure to keep the "\\research\\R" part because this is what it's going to be loaded. 6. After changing the file, save it and load the project again in RStudio.
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