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Variational Graph Recurrent Neural Networks - PyTorch

Python 100.00%
variational-autoencoder graph-auto-encoder representation-learning variational-inference graph-convolutional-networks graph-embedding node-embedding graph-neural-networks graph-neural-network variational-autoencoders

vgrnn's Issues

Incorrect use of torch.nn.utils.clip_grad_norm

In both training examples clip_grad_norm() is called after opt.step() so it isn't doing anything. It should either be removed or moved before the optimizer updates the model components

Failed to load data

Hi,

I'm trying to run your code but always fail to load the data at this line. Please find below the error log:

UnicodeDecodeError: 'ascii' codec can't decode byte 0x96 in position 8: ordinal not in range(128)

Thanks for your help!

Bug in prediction code?

Hello,

I am looking at the VGRNN_prediction.py script and I found what seems to be a bug on this line:

nll_loss += self._nll_bernoulli(dec_t_sl, adj_orig_dense_list[t])

Shouldn't it be:

nll_loss += self._nll_bernoulli(dec_t_sl, adj_orig_dense_list[t + 1])

in order to do link prediction for the graph at time T+1?
Did I misunderstand something?

Thanks

Pre-processing code for HEP-TH, Cora, and Social Evolution

Hi,

I've been reading your paper and I wanted to play a bit with the datasets that you used for the experiments. I see that you have uploaded the pre-processed data for Facebook, Enron, and Colab, but I couldn't find the other three datasets.
Do you have the code to produce the time series for HEP-TH, Cora, and Social Evolution? Or even the pre-processed data like for the other datasets would be good.

Thanks,
Daniele

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