vincent-ac / vacactions

My Pharmacometric Functions

vacactions

The goal of vacactions is to have a place to store and documents the little functions that I write to help me in my pharmacometric projects but that are not big enough to warrant a specific package.

Installation

You can install the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("Vincent-AC/vacactions")

Some functions of the package depend on the python package pharmpy. Please go here for installation instructions

Example

This is a basic example which shows you how to solve a common problem:

library(vacactions)
## Create multiple models that are a copy of an input one, with updated inits.
create_updated_modfiles("run1.mod",c("run2.mod","run3.mod"))
## 
## Create multiple models that are a copy of multiple original models, with updated inits.
## run3 will be an updated run1 and run4 will be an updated run2
create_updated_modfiles(c("run1.mod","run2.mod"),c("run3.mod","run4.mod"))

vacactions's Issues

devtools::test() passes but devtools::check() doesn't

There is an issue with tests when ran with devtools::check(). It seems to be linked with file path in the testing directory. First error:

FileNotFound[Errno 2] No such file or directory: 'output_models/run3.mod'

I did not find an easy fix and since I don't intend to sumbit it to CRAN I will let this issue on the side for the moment.