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biocbuildtoolsprev

This repository includes resources for illustrating many aspects of software ecosystem design and maintenance relevant to the Bioconductor project.

bioccdnm

A short course on Bioconductor for Genomic Data Science at Channing Division of Network Medicine

biocchallenges

Challenges for the Biocoductor community.

bioccheck

bioccuratedccdg_anvil

Manage concepts related to PFB import from Gen3 to AnVIL; example of CCDG

biocedam

preliminary investigation of biocViews in relation to EDAM ontology

biocfhir

Illustration of FHIR V4 Processing with synthea data

biocfilecache

Manage Files Across Sessions

biocframe

flexible data frame

biocgo

Description of relationships between Gene Ontology and Bioconductor

biochail

Using hail via Basilisk

biochca

Notes on Bioconductor tasks for HCA 2018 meeting

biochookchecks

Have a look at collaborative approach to git hook evaluation and programming

biochprclk

A look at the pangenome consortium resources in AnVIL

biocibc

exploring actions-based CI with the Bioconductor ROC package

biocinperson

Notes for in person meetings

biocmanager

CRAN Package For Managing Bioconductor Packages

biocmetadatalab

Exploration of statistical semantics for genomic archive metadata

biocmimb

Methods in Molec Biol/Cancer Bioinfo article

biocnihintra

Bioconductor examples for NIH Intramural demonstrations of AnVIL

biocoffpiste

Code that aids experts who wish to use incompatible versions of R and Bioconductor

bioconcotk

Bioconductor components for general cancer genomics

bioconductor_build_docker

Bioconductor Docker image with LaTeX

bioconductor_vagrant

A Vagrant configured with Saltstack for a Bioconductor Linux build machine.

biocopencravat

Components of a workshop on variant annotation using OpenCRAVAT with Bioconductor

biocov

An overview of Bioconductor with applications to multiomics, genome representation, and single-cell biologiy

biocparallel

Bioconductor facilities for parallel evaluation (experimental)

biocpbg

interfaces to pytorch biggraph

biocpkgstatus

Work with a database of longitudinally collected information on Bioconductor package check status

biocpkgtools

Access Bioconductor repository and project metadata from within R