Comments (1)
the paths were fine, it just appears that Github's jupyter notebook preview does not preview images included with tags and scaling. Changed to pure markdown. Now the unscaled images look a bit large but it will do.
from lattice_lightsheet_deskew_deconv.
Related Issues (20)
- Think about deployment for end-users HOT 1
- Real-Time deskew visualization HOT 15
- Add scale to processed tiffs HOT 1
- fixed camera background subtraction - clip at 0, allow negative ? Also include for PSF. HOT 1
- openCL error HOT 6
- Assertion error in tensorflow
- PSF management - lattice pattern in file name
- include gputools.deconv as deconvolution backend HOT 3
- Performance in batch mode HOT 5
- artefacts introduced by rotate to coverslip HOT 6
- Artefacts on RTX 2080 Ti HOT 1
- Architecture not well-suited for multiprocessing due to pickling limitations HOT 9
- Not enough GPU ram ... make a "slow" option HOT 12
- psf generation - change to two stage affine to avoid artefacts HOT 1
- reuse PSF
- Fail gracefully when out of GPU memory HOT 1
- bug: incompatible shapes HOT 4
- psf z_galvo step extraction fails for 20190802 dataset HOT 1
- CPU version — ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' HOT 6
- Allow deskewing when no PSF is present
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from lattice_lightsheet_deskew_deconv.