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   BWT-SW - Local alignment tool that finds all alignments

   For descriptions of BWT-SW and other useful materials, visit
   www.cs.hku.hk/~ckwong3/bwtsw

   Copyright (C) 2006, Wong Chi Kwong.

   This software package is free software; you can redistribute it
   and/or modify it under the terms of the GNU General Public License
   as published by the Free Software Foundation; either version 2
   of the License, or (at your option) any later version.

   This software package is distributed in the hope that it will be 
   useful, but WITHOUT ANY WARRANTY; without even the implied warranty
   of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software
   Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
   02110-1301, USA.