GithubHelp home page GithubHelp logo

welchr / snipper Goto Github PK

View Code? Open in Web Editor NEW
3.0 3.0 0.0 3.18 MB

A program for quickly researching genes and other genomic features near disease-associated regions of the genome (from GWAS or sequencing studies.)

Home Page: http://csg.sph.umich.edu/snipper/

Python 98.75% JavaScript 1.11% Shell 0.14%

snipper's People

Contributors

welchr avatar

Stargazers

 avatar  avatar  avatar

Watchers

 avatar  avatar

snipper's Issues

Genes with synonyms that are themselves genes causes snipper to mis-report SNP locations

From a user:

"One of the SNPs I looked up (rs4646404) is located in an intron of the PEMT gene (chr17). However, Snipper annotated it as being within the MUC1 gene, which is on a different chromosome altogether (chr1). It looks like part of the issue is that "PEMT" is a synonym for MUC1 (it likely stands for something else, of course). However, the other two nearby genes listed for rs4646404 (RASD1 and MED9) do make sense."

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.