A tool for genotyping short tandem repeat.
before install, you should install htslib, spoa and ssw
g++ genoTR.cpp -o genoTR -Ihtslib/include -Lhtslib/lib -lhts -Ispoa/include -Lspoa/lib -lspoa -lz -Wall ssw_cpp.cpp ssw.c
This tool is currently only suitable for highly inbred species, as it lacks a phasing stage.