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Wen Haimei's Projects

scripts_vcf icon scripts_vcf

Scripts to handle and filter VCF files (intended for personal use)

scvi-tools icon scvi-tools

Deep probabilistic analysis of single-cell omics data

seal icon seal

SEAL (learning from Subgraphs, Embeddings, and Attributes for Link prediction). "M. Zhang, Y. Chen, Link Prediction Based on Graph Neural Networks, NeurIPS 2018 spotlight".

shanghai_house_knowledge icon shanghai_house_knowledge

2020年11月在上海买房经历总结出来的买房购房做的一些功课分享给大家,技术人帮助技术人,希望对大家有所帮助。

shap icon shap

A unified approach to explain the output of any machine learning model.

single-cell-tutorial icon single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

speos icon speos

A positive-unlabeled ensemble learning framework for disease gene prioritization.

splitorfs icon splitorfs

A workflow to computationally detect transcripts that could generate several distinct ORFs that match to the same protein. This can be used to find for example nonsense-mediated decay transcripts that make more than one ORF.

sqanti2 icon sqanti2

Private repo for Liz's modified SQANTI

starsandclown icon starsandclown

☀️Github星聚弃疗榜, 让吃瓜群众也能享受Github带来的乐趣~Github StarsAndClown, Let the people who eat me can enjoy the fun of Github~

stdeconvolve icon stdeconvolve

Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

suppa icon suppa

SUPPA2: Fast quantification of differential splicing

supreme icon supreme

SUPREME: A GCN based approach for cancer subtype prediction

tadw icon tadw

code for IJCAI2015 paper "Network Representation Learning with Rich Text Information"

talon icon talon

Technology agnostic long read analysis pipeline for transcriptomes

tcga-embedding icon tcga-embedding

using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data

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