westurner / healthref

Health Reference App: Turtle, RDFLib, Jinja2 https://westurner.org/healthref/

healthref

A Health Reference Application

Generates a static HTML reference page from RDF (in Turtle syntax).

Example

https://westurner.github.io/healthref/

Usage

Install:

git clone https://github.com/westurner/healthref
make install
# pip install -r requirements.txt

Generate:

make html
# python ./healthref.py -i treatment_alternatives.ttl -o index.html

View:

make view
# x-www-browser ./index.html

Requirements

• RDFLib
• Jinja2
• Pygments
• n3pygments

healthref's Issues

ENH: Linked Data: Link to UMLS RDF

• schema.org/Text (#1) is not adequate.

see: http://www.bioontology.org/

ENH: http://www.w3.org/TR/html-json-forms/

http://www.w3.org/TR/html-json-forms/

This specification defines a new form encoding algorithm that enables the transmission of form data as JSON. Instead of capturing form data as essentially an array of key-value pairs which is the bread and butter of existing form encodings, it relies on a simple name attribute syntax that makes it possible to capture rich data structures as JSON directly.

ENH: RDFa, JSON-LD, Turtle, n3.js

https://github.com/RubenVerborgh/N3.js/tree/master/lib

http://json-ld.org/#developers

https://github.com/digitalbazaar/jsonld.js

https://westurner.github.io/wiki/tools.html#tool-collections

pandas-dev/pandas#3402 -> https://github.com/westurner/pandasrdf

specs: https://wrdrd.github.io/docs/consulting/knowledge-engineering#semantic-web-standards

ENH: rdflib-jsonld and/or PyLD

a project named healthref

ENH: IPython _repr_html_ and API

ENH: Link to NIH Pubmed Health Drugs A-Z

ex: http://www.ncbi.nlm.nih.gov/pubmedhealth/PMHT0000015/

ENH: click CLI API

http://click.pocoo.org/3/

ENH: lookup ICD10 codes with pycd10api REST API

https://github.com/westurner/pycd10api/blob/master/pycd10api/icd/cm.py

see: http://schema.org/MedicalCondition#examples for an example of http://schema.org/MedicalCode

ENH: python-prompt-toolkit

https://github.com/jonathanslenders/python-prompt-toolkit

ENH: Linked Data: Link to schema.org terms

http://schema.org/docs/meddocs.html

### dbpedia <--> schema.org mappings (TODO)
dbp:Therapy
  owl:sameAs schema:MedicalTherapy ;
  .
td:DrugGroup a rdfs:Class;
  owl:sameAs schema:DrugClass ;
  .
td:drugGroup a rdf:Property ;
  owl:sameAs schema:drugClass ;
  .

ENH: Link to FDA Drug Safety and Availability info

ex: http://www.fda.gov/Drugs/DrugSafety/InformationbyDrugClass/ucm165107.htm