Comments (5)
from doc-annovar.
What I mean is that hg38 and hg19 coordinates have some inconsistency, there is some missing allele frequency at the inconsistent sites between two version with ExAC dataset, but the corresponding amino acid change is the same. So is there any solutions to the problem?
from doc-annovar.
from doc-annovar.
For example, the rs79881008 have the allele frequency information in the ExAC brower(AF = 0.2106, ref/alt = G/A), but in the Annovar exac03 annotation results, there is no AF information at the rs79881008.
from doc-annovar.
from doc-annovar.
Related Issues (20)
- stopgain annotation confused HOT 1
- Which version of 1000G database is used for wANNOVAR? HOT 5
- Access to previous versions of ANNOVAR HOT 5
- Error when running table_annovar.pl
- annovar server down? HOT 4
- annovar refLink download failed HOT 2
- Invalid record HOT 3
- Multiple errors for hg38? HOT 2
- I found some bugs in the refGene.txt HOT 2
- Error: the required database file annovar/AT_refGeneMrna.txt/hg18_refGene.txt does not exist. HOT 3
- Cannot able to download annotations from annovar HOT 4
- Indels are removing as invalid input HOT 3
- wAnnovar down? HOT 2
- wannovar.wglab.org down? HOT 1
- Annovar not responding
- revel format ? HOT 7
- annotate.variation.pl showing error
- zygosity column
- Index file for gnomad database from gnomad website
- Database Downloads Failing HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from doc-annovar.